View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15349_low_8 (Length: 316)
Name: NF15349_low_8
Description: NF15349
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15349_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 13 - 298
Target Start/End: Complemental strand, 40336483 - 40336197
Alignment:
| Q |
13 |
aatatcacgtgatatgctaaaactccattgtgtgactctcccattgccatgccatatttcttggaatttcaggaaagccacatttcttgaaatttcagga |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40336483 |
aatatcacgtgatatgctaaaactccattgtgtgactctcccattgccatgccacatttcttggaatttcaggaaagccacatttcttgaaatttcagga |
40336384 |
T |
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| Q |
113 |
aaaggatttataaattaatttgtagactaaaagtaaaaaccgttagacc-nnnnnnnnnnnnnnnnccgttagtattaggtgtacaaatagcactattat |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |
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| T |
40336383 |
aaaggatttataaattaatttgtagactaaaagtaaaaaccgttagaccaaaaaaaaaaaaaaaaaccgttagtattaggtgtacagatagcactattat |
40336284 |
T |
|
| Q |
212 |
cctaaacaaaatatagcaagctttaaagtttcttaatatggtacattttccaaattgcttaaggttgcttcaccaaattgcttaata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40336283 |
cctaaacaaaatatagcaagctttaaagtttcttaatatggtacattttccaaattgcttaaggttgcttcaccaaattgcttaata |
40336197 |
T |
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