View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15349_low_9 (Length: 302)

Name: NF15349_low_9

Description: NF15349

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF15349_low_9

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 197; E-Value: 1e-107

Query Start/End: Original strand, 17 - 254

Target Start/End: Original strand, 30393323 - 30393566

Alignment:

Q	17	aggaaggtaacattctagggtttaacttcaatactaaaaagcaaaagcccatcaaaagtgctaattaaatgtttgccttaggttagtaaagaaaaagaag	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30393323	aggaaggtaacattctagggtttaacttcaatactaaaaagcaaaagcccatcaaaagtgctaattaaatgtttgccttaggttagtaaagaaaaagaag	30393422	T

Q	117	------taccaattgtgtgattacgagaaaattgtcaannnnnnnnagggaatgagaaaattgttcatacaaatgtttatatcgatgaaagttaattata	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30393423	tactcctaccaattgtgtgattacgagaaaattgtcaattttttttagggaatgagaaaattgttcatacaaatgtttatatcgatgaaagttaattata	30393522	T

Q	211	atcaacaataaaacttaagtacaactaacttattagtacattgt	254	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30393523	atcaacaataaaacttaagtacaactaacttattagtacattgt	30393566	T

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Target: chr8; HSP #2

Raw Score: 57; E-Value: 8e-24

Query Start/End: Original strand, 237 - 293

Target Start/End: Original strand, 30393583 - 30393639

Alignment:

Q	237	aacttattagtacattgtagatttcataaatgttcgatgtattggagttagaataat	293	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	30393583	aacttattagtacattgtagatttcataaatgttcgatgtattggagttagaataat	30393639	T

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