View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1534_low_2 (Length: 260)
Name: NF1534_low_2
Description: NF1534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1534_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 14 - 172
Target Start/End: Original strand, 49928541 - 49928703
Alignment:
| Q |
14 |
aaattaaatctgcattatctctatatcatgaattatgatgagttttttatattaattttgttggnnnnnnnn----ctgtagccttacaacttcatccag |
109 |
Q |
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| T |
49928541 |
aaattaaatctgcattatctctatatcatgaattatgatgagttttttatattaattttgttggttttttttttttctctagccttacaacttcatccag |
49928640 |
T |
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| Q |
110 |
ataagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttttgtca |
172 |
Q |
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| T |
49928641 |
ataagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttttgtca |
49928703 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 212 - 253
Target Start/End: Original strand, 49928740 - 49928781
Alignment:
| Q |
212 |
caagtattgtaacaatggtacaaaatctcatttccctttgct |
253 |
Q |
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| T |
49928740 |
caagtattgtaacaatggtacaaaatctcatttccctctgct |
49928781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 13696126 - 13696049
Alignment:
| Q |
90 |
agccttacaacttcatccagataagaacaaacatccaaaagctgaaattgccttcaaacttgtttctgaggttagttt |
167 |
Q |
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| T |
13696126 |
agccttgcaacttcatccagataagaataaacatcccaaggctgaaattgcattcaagcttgtctctgaggttagttt |
13696049 |
T |
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