View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1534_low_5 (Length: 246)
Name: NF1534_low_5
Description: NF1534
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1534_low_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 15 - 246
Target Start/End: Complemental strand, 527089 - 526856
Alignment:
| Q |
15 |
agcctccatgttcatttggtttgcttcttctcttgtccttgttgacctattctgatacatgttcttgctgtgtttttgatgtggagtattaaacatgttg |
114 |
Q |
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| T |
527089 |
agcctccatgttcatttggtttgcttcttctcttgtccttgttgacctattctgatacatgttcttgctgtgtttttgatgtggagtattaaacatgttg |
526990 |
T |
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| Q |
115 |
cttgtttctttgttactcttataacctgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtagaagaggtaaa--ata |
212 |
Q |
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| T |
526989 |
cttgtttctttgttactcttataacctgccagaacaggaattcaaaaatattgattcaacaatgtgatcagaagcaaatgtgtagaagaggtaaaatata |
526890 |
T |
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| Q |
213 |
tcaattaatgtatttgacagtcacagttacggtc |
246 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
526889 |
tcaattaatgtatttgacagtcacagttacggtc |
526856 |
T |
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