View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15350_low_2 (Length: 597)
Name: NF15350_low_2
Description: NF15350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15350_low_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 23)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 584
Target Start/End: Complemental strand, 19279296 - 19278730
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
19279296 |
aaattctaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttagactaacatggtctccactaggt |
19279197 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
19279196 |
agtatatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcacatatagctccatgaagataaactagcttatcaa |
19279097 |
T |
|
| Q |
218 |
gctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttga |
317 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19279096 |
gctctttcacactaaaatttgtgatcaaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttga |
19278997 |
T |
|
| Q |
318 |
tacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtctctaatatacgtctcattcgtttcg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
19278996 |
tacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtctctaatatacatctcattcgtttcg |
19278897 |
T |
|
| Q |
418 |
ccctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcatcttcatttctttcgagtattcttttctcttcatcgcctt |
517 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19278896 |
ccctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcgtcttcatttctttcgagtattcttttctcttcatcacctt |
19278797 |
T |
|
| Q |
518 |
tgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcatctc |
584 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
19278796 |
tgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcttctc |
19278730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 18 - 487
Target Start/End: Complemental strand, 13244649 - 13244177
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||||||||| ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||| |||||| |||||||||||| |
|
|
| T |
13244649 |
aaattccaagcaatcatctccccatatttgttgcatccttcccattgcatacaaagaatatatcaactttgtatttggaccaacatgttctccactaggt |
13244550 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| |||| || || | || |||||||| | ||||| | ||| ||||| ||||| |||| |||| |||| ||||||||||||||||| |||||||||| |
|
|
| T |
13244549 |
agtatatcagatttgatagcgcacttgtgctgaaatgccagaggaggatatagcctcaaggtttcacatatggctccatgaaggtaaacaagcttatcaa |
13244450 |
T |
|
| Q |
218 |
gctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttga |
317 |
Q |
| |
|
|| || ||| | ||||| |||| |||| ||||||| ||||| ||| ||| | |||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
13244449 |
tcttttccacgtttaaattattgattaaattctcctcttgtgttagacaattatctttgatctcttgaataattttcgcttccccaataggatgagttga |
13244350 |
T |
|
| Q |
318 |
tacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtctctaatatacgtctcat---tcgtt |
414 |
Q |
| |
|
|| ||||||||||||||| | ||||| ||||||||||||||||| |||||| | |||||||| | ||||||||||| |||||| |||||| || || |
|
|
| T |
13244349 |
aacaagccaaaagaaccaacttagacctgaactaattgttccatttcctgcaccgaagagatttaccgcagtgtctctgatatacttctcatcgatcatt |
13244250 |
T |
|
| Q |
415 |
tcgccctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgcatcttcatttc |
487 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||| |
|
|
| T |
13244249 |
tccccctttcccaatctttccttcattagttcttttagcaggcaataacgagattcatctacatcttcatttc |
13244177 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 22 - 444
Target Start/End: Original strand, 13271654 - 13272082
Alignment:
| Q |
22 |
tccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggtagtg |
121 |
Q |
| |
|
|||| ||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
13271654 |
tccaagcaatcaccaccccatacatgttccattcttcccattgcatacaaagagtatattaactttgtgtttggaccaacatggtgtccactaggtagta |
13271753 |
T |
|
| Q |
122 |
tatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaagctc |
221 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||| ||| |||||||| || |||| |||| |||||||| |||||||||||| |||||||||| | |
|
|
| T |
13271754 |
tatcagaattaactgcacacttgtgatcaaatggtataggaggataaagtctcaaggtttcacatatagctgcatgaaggtaaatcagcttatcaatgtt |
13271853 |
T |
|
| Q |
222 |
tttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacg |
321 |
Q |
| |
|
|| ||| | ||||| ||||| |||| ||||||| ||||| ||| | | | |||||||||||||||| ||||||||| ||| ||||||||||||| || |
|
|
| T |
13271854 |
ttcaacatttaaattattgatcaaattctcctcttgtgttagacaatgatctttgatctcttgaataagttttgcttccacattaggatgagttgaaaca |
13271953 |
T |
|
| Q |
322 |
agccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtctctaatatac------gtctcattcgttt |
415 |
Q |
| |
|
||||||||||||||| | ||||| ||||||| ||||||||| ||||||||||||||| ||| |||||||||||||||||| | |||||||||| |
|
|
| T |
13271954 |
agccaaaagaaccaacttagacctgaactaactgttccatttcctgcagccaagagagtgaatgcagtgtctctaatatacttttcattttcattcgttt |
13272053 |
T |
|
| Q |
416 |
cgccctttcccaatctttccttcattagt |
444 |
Q |
| |
|
| |||||||||| | ||||||||||||| |
|
|
| T |
13272054 |
cttcctttcccaagccttccttcattagt |
13272082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 176; E-Value: 2e-94
Query Start/End: Original strand, 22 - 449
Target Start/End: Complemental strand, 13080989 - 13080562
Alignment:
| Q |
22 |
tccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggtagtg |
121 |
Q |
| |
|
|||| |||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
13080989 |
tccaagcaatcctctccccatatttgctccatccttcccattgcatacaaagaatatattaactttgtatttggactaacatggtctccactaggaagtt |
13080890 |
T |
|
| Q |
122 |
tatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaagctc |
221 |
Q |
| |
|
|||| || || | ||||||||||| | ||||| ||||| ||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
13080889 |
tatccgatttgatagcacacttgtgctgaaatgctacagaaggatatagccttaaggcttcacatatggctccatgaaggtaaactagcttatcaagctc |
13080790 |
T |
|
| Q |
222 |
tttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacg |
321 |
Q |
| |
|
|| ||||| ||||| | ||| |||| || || | | ||||||| ||| | |||||||||||||||||||| | || || ||||||| ||||| || |
|
|
| T |
13080789 |
ttccacacctaaattagcgataaaattctcatcgtgttttaaacaattatctttgatctcttgaataattttaccatctaccctaggatgcgttgaaacc |
13080690 |
T |
|
| Q |
322 |
agccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtctctaatatacgtctcattcgtttcgccct |
421 |
Q |
| |
|
|||||||| |||||| ||||||| | ||||||||||||||| |||||| |||||||||||| | ||| |||||||||||| ||||| | |||| |||| |
|
|
| T |
13080689 |
agccaaaaaaaccaagtgagacctgtactaattgttccatttcctgcaaccaagagattgattgtagtatctctaatatacctctcaaccatttccccct |
13080590 |
T |
|
| Q |
422 |
ttcccaatctttccttcattagttcttt |
449 |
Q |
| |
|
|| |||||| ||||| |||||| ||||| |
|
|
| T |
13080589 |
tttccaatccttcctccattagatcttt |
13080562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 143; E-Value: 8e-75
Query Start/End: Original strand, 36 - 402
Target Start/End: Original strand, 13086189 - 13086555
Alignment:
| Q |
36 |
accccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggtagtgtatcggaattaact |
135 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||| |||| | || | | |
|
|
| T |
13086189 |
accccatatttgtttcatccttcccattgcatacaaagagtatattaacttagtatttggtttaacataatctccactaggtagtatatcagctttgatt |
13086288 |
T |
|
| Q |
136 |
gcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaagctctttcacactgaaat |
235 |
Q |
| |
|
||||||||||| | |||||||||||| ||||||||||| || |||||| ||||||||||||||||||| ||||| |||| ||||| || || || |||| |
|
|
| T |
13086289 |
gcacacttgtgctgaaatggtacaggaggataaagcctcaatgcttcacatatagctccatgaaggtacactagtttattaagcttttcaactcttaaat |
13086388 |
T |
|
| Q |
236 |
ttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaacca |
335 |
Q |
| |
|
| |||| | |||||||||| | || || ||| ||| | || ||||||||||| ||||| ||||| || || ||||||||| || |||||| ||||||| |
|
|
| T |
13086389 |
tagtgaccaaattatcctcatgtgatagacaattatcttttatctcttgaattattttagcttccactatgaaatgagttgaaacaagccaagagaacca |
13086488 |
T |
|
| Q |
336 |
attgagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtctctaatatac |
402 |
Q |
| |
|
| | ||||| ||||||| ||||||| | |||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
13086489 |
acttagacctgaactaactgttccacttcctgcagctaagagattgaatgcagtgtctctaatatac |
13086555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 12964003 - 12963797
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
12964003 |
aaattccaagcaatcttctccccatatttgttccatccttcccattgcatacaaagaatatatcaactttgtatttggactaacatggtctccactaggt |
12963904 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
| | |||| || |||| ||||||||||||||||||||||| ||| |||||||||||||| |||||| | |||||||||||||| ||||| |||||||||| |
|
|
| T |
12963903 |
aatatatctgatttaattgcacacttgtgttcaaatggtataggaggataaagccttaaagcttcacaaatagctccatgaagataaacaagcttatcaa |
12963804 |
T |
|
| Q |
218 |
gctcttt |
224 |
Q |
| |
|
|| |||| |
|
|
| T |
12963803 |
gcccttt |
12963797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 277 - 568
Target Start/End: Complemental strand, 12963780 - 12963489
Alignment:
| Q |
277 |
atctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaaga |
376 |
Q |
| |
|
||||||||||||||||| | ||| ||||||||||||||||| || ||||||||||||||| | ||||| ||||||| ||||||| | |||||||| |||| |
|
|
| T |
12963780 |
atctcttgaataattttagtttccacaataggatgagttgaaacaagccaaaagaaccaacttagacctgaactaactgttccacttcctgcagctaaga |
12963681 |
T |
|
| Q |
377 |
gattgagagcagtgtctctaatatacgtctcattcgtttcgccctttcccaatctttccttcattagttcttttaccaggcaataatgagattcatccgc |
476 |
Q |
| |
|
||||||| | |||| | ||||||| ||||| | |||| ||||||||||||| |||||||||||| ||||||| ||||||| |||||||||||||| | |
|
|
| T |
12963680 |
gattgagtgttgtgtttataatatatttctcagccatttccccctttcccaatccttccttcattagatcttttagcaggcaagaatgagattcatccac |
12963581 |
T |
|
| Q |
477 |
atcttcatttctttcgagtattcttttctcttcatcgcctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagcta |
568 |
Q |
| |
|
||||| || |||| | | ||| |||||||||| || ||||||||||||||||||| |||| |||||||| |||| |||||||| ||||| |
|
|
| T |
12963580 |
gtcttcgttgcttttaaatgttcgtttctcttcaccgtctttgtaataagatatacaattgtacaagaatttatgaatattttcttgagcta |
12963489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 18 - 368
Target Start/End: Original strand, 13007264 - 13007611
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||| || || |||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
13007264 |
aaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggt |
13007363 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| |||||||||| | |||||| | || ||||| |||||||| ||||||||||| | ||||||| ||| ||||||||| ||||| ||||||||||||| |
|
|
| T |
13007364 |
agtatatcggaattgattgcacagatatgctcaaaaggtacaggaggataaagcctcatggcttcacatagagctccatggaggtacactagcttatcaa |
13007463 |
T |
|
| Q |
218 |
gctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttga |
317 |
Q |
| |
|
| || | || ||| | || ||| ||||||| ||| |||||| | ||||| |||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
13007464 |
gatccacatctctcaaa---ggagtctgattctcctcttgtgtgggccagttatctttgatttcttgaataattttggcttccacaataggatgagttga |
13007560 |
T |
|
| Q |
318 |
tacgagccaaaagaaccaattgagacccgaactaattgttccattacctgc |
368 |
Q |
| |
|
|| ||||| || |||||| ||||||| ||||||||||| ||||| ||||| |
|
|
| T |
13007561 |
aacaagccagaaaaaccaactgagacctgaactaattgtgccatttcctgc |
13007611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 13204523 - 13204723
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||| || || |||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
13204523 |
aaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggt |
13204622 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| ||||||| || | |||||| | || ||||| |||||||| |||||||| || ||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
13204623 |
agtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggcttcacatatagctccatgaaggtacactagcttatcaa |
13204722 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
|
| |
|
|
| T |
13204723 |
g |
13204723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 362
Target Start/End: Original strand, 13094463 - 13094804
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||| || || |||||||||||||||||||||||||| | |||||||||||| ||||| ||||||||||| ||||||||| |||||||||| |
|
|
| T |
13094463 |
aaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaagagtaaattaaagttgtatttggagtaacatggtatccactaggt |
13094562 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| |||| || || | |||||| | || ||||| |||||||| |||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
13094563 |
agtatatcagatttgattgcacagatatgctcaaaaggtacaggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaa |
13094662 |
T |
|
| Q |
218 |
gctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttga |
317 |
Q |
| |
|
| || | || ||| || ||| || ||||||| |||||| || ||| | ||||||||||||| |||||| |||| |||||||||| |||||| |
|
|
| T |
13094663 |
gatccacatccctcaaa---gtaatccgataatcctctcgtgttaaccaattatctctgatctcttgaatgattttttcttccacaataggataagttga |
13094759 |
T |
|
| Q |
318 |
tacgagccaaaagaaccaattgagacccgaactaattgttccatt |
362 |
Q |
| |
|
| ||||| || |||||| ||||| | ||||||||||| ||||| |
|
|
| T |
13094760 |
aagaagccagaaaaaccaactgagagctgaactaattgtaccatt |
13094804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 368
Target Start/End: Complemental strand, 30368236 - 30367889
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| |||||| || |||||||||| ||||||||||||||| |||||||||||||| |||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
30368236 |
aaattccatgcaatcttctccccatattttttccatccttcccatagcatacaaagagtaaattaacttggtatttggactaacattctctccactaggt |
30368137 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| |||| || || | ||||| | | ||||| ||||||| ||||| | ||| | || |||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
30368136 |
agtatatcagatttgattgcactgataagctcaaaaggtacagtaggatacaacctcatggattcacatatagctccatggaggtagactagcttatcaa |
30368037 |
T |
|
| Q |
218 |
gctctttca-cactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttg |
316 |
Q |
| |
|
| || || || |||| || ||| |||| || | ||||| || ||| ||| | |||||||||||||||||||| ||||| |||||||||||||||| |
|
|
| T |
30368036 |
ggctttccaccattgaa----gttatccaattctcatgttttgatacacaattatctttgatctcttgaataattttggcttccacaataggatgagttg |
30367941 |
T |
|
| Q |
317 |
atacgagccaaaagaaccaattgagacccgaactaattgttccattacctgc |
368 |
Q |
| |
|
| || ||||| || |||||| |||||| ||||||| ||| ||||||||||| |
|
|
| T |
30367940 |
aaacaagccagaaaaaccaactgagacttgaactaagtgtgccattacctgc |
30367889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 13129892 - 13130226
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||| || || |||||||||||||||||||||||||| | |||||||||||| || || ||||||||||||||||||||| |||||||||| |
|
|
| T |
13129892 |
aaattccatgcagtcttctccccatatttgttccatccttcccatagaatacaaagagtaaatcaaagttgtatttggactaacatggtatccactaggt |
13129991 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| |||| || || | || ||| | || ||||| |||| ||| |||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
13129992 |
agtatatcagatttgattgaacagatatgctcaaaaggtataggaggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaa |
13130091 |
T |
|
| Q |
218 |
gctctttcaca---ctgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagt |
314 |
Q |
| |
|
| || |||| || ||| || ||| |||| |||||| |||||| || ||| | |||||||||||||| |||||| |||| |||||||||| ||| |
|
|
| T |
13130092 |
gatc---cacatgcctcaaa---gtaatccgattaccctcttgtgttaaccaattatctttgatctcttgaatgattttttcttccacaataggataagt |
13130185 |
T |
|
| Q |
315 |
tgatacgagccaaaagaaccaattgagacccgaactaattg |
355 |
Q |
| |
|
||| | ||||| || |||||| ||||| | |||||||||| |
|
|
| T |
13130186 |
tgaaagaagccagaaaaaccaactgagagctgaactaattg |
13130226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 18 - 218
Target Start/End: Complemental strand, 13070304 - 13070104
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||| || || |||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||||||||||| | |||||||||||| |
|
|
| T |
13070304 |
aaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaacacgctctccactaggt |
13070205 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| ||||||| || | |||||| | || ||||| |||||||| |||||||| || |||| |||| ||||||||||||||||||| ||||| ||||||| |
|
|
| T |
13070204 |
agtatatcggatttgattgcacatatatgctcaaaaggtacaggaggataaagtctcaaggtttcacatatagctccatgaaggtacactagattatcaa |
13070105 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
|
| |
|
|
| T |
13070104 |
g |
13070104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #14
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 18 - 355
Target Start/End: Original strand, 13161585 - 13161919
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||| || || ||||||| |||||||||||| ||||| | ||||| |||||| ||||| ||||||||||||||| | | |||||||||||| |
|
|
| T |
13161585 |
aaattccatgcagtcttccccccatagttgttccatcctgcccatagaatacatagagtacattaaacttgtatttggactaatacgttctccactaggt |
13161684 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| ||||||| || | |||||| | || ||||| |||| |||||||||||||||||||| |||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
13161685 |
agtatatcggatttgattgcacagatatgctcaaaaggtataggtggataaagccttaaggtttcacatatagctccatggaggtatactagcttatcaa |
13161784 |
T |
|
| Q |
218 |
gctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttga |
317 |
Q |
| |
|
| | | || ||| | ||| ||||||||||| ||||| || ||| | |||||||||||||| |||||| |||| |||||||||| |||||| |
|
|
| T |
13161785 |
gaaccacatccctcaaa---ataatccgattatcctcttgtgttagccaattatctttgatctcttgaatgattttttcttccacaataggataagttga |
13161881 |
T |
|
| Q |
318 |
tacgagccaaaagaaccaattgagacccgaactaattg |
355 |
Q |
| |
|
| |||||| || |||||| ||||| | |||||||||| |
|
|
| T |
13161882 |
aaggagccagaaaaaccaactgagagctgaactaattg |
13161919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #15
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 13101064 - 13101264
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||| || || |||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||||||||| | | ||||||||||| |
|
|
| T |
13101064 |
aaattccatgcagtcttctccccatatttgttccatccttcccatagcgtacaaagagtacaataaccttgtatttggactaaaacgctctccactagga |
13101163 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| ||||||| || | || ||| | || ||||| |||||||| ||||||||||| |||| |||| ||||||||||||| ||||| ||||||||||||| |
|
|
| T |
13101164 |
agtatatcggatttgattgaacatatatgctcaaaaggtacaggaggataaagcctcaaggtttcacatatagctccatggaggtacactagcttatcaa |
13101263 |
T |
|
| Q |
218 |
g |
218 |
Q |
| |
|
| |
|
|
| T |
13101264 |
g |
13101264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #16
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 415
Target Start/End: Complemental strand, 13065341 - 13064947
Alignment:
| Q |
18 |
aaattccaggcaatcatcaccccatatttgttccatccttcccattgcatacaaagagtatattaactttgtatttggactaacatggtctccactaggt |
117 |
Q |
| |
|
|||||||| ||| || || |||||||||| |||||||||||||||| ||||||| |||||| || | ||||||||||||| |||||| |||||||||| |
|
|
| T |
13065341 |
aaattccatgcagtcttctccccatattttctccatccttcccattgaatacaaatagtataatatccttgtatttggacttacatggactccactagga |
13065242 |
T |
|
| Q |
118 |
agtgtatcggaattaactgcacacttgtgttcaaatggtacaggtggataaagccttaaggcttcaaatatagctccatgaaggtaaactagcttatcaa |
217 |
Q |
| |
|
||| |||| | || | |||| |||| || || | |||||||| ||||||||||||||||||||| |||||||||| || ||||||| ||| ||||||| |
|
|
| T |
13065241 |
agtatatcagctttgattgcaaacttttgctcgataggtacaggaggataaagccttaaggcttcacatatagctccgtggaggtaaattagtttatcaa |
13065142 |
T |
|
| Q |
218 |
gctctttcacactgaaatttgtgatcgaattatcctcttttgttaaacagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttga |
317 |
Q |
| |
|
||| || |||| | || || ||| | || || || | | || ||| ||| | || |||||||||||||| || ||||| |||| ||||||| ||| |
|
|
| T |
13065141 |
gcttttccacaattgaa---gtaatcaagttttcatcatcagatagacaattatctttcatctcttgaataatcttggcttccacaacaggatgacatga |
13065045 |
T |
|
| Q |
318 |
tacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagattgagagcagtgtctctaatatacgtctcattcgttt |
415 |
Q |
| |
|
|| ||||||||||||||| ||||||| ||||||| ||| || || || || ||| ||||||| ||||||||||||| |||| ||||| |||||| |
|
|
| T |
13065044 |
aacaagccaaaagaaccaactgagacctgaactaactgtgccgtttcccgctaacaatagattgactgcagtgtctctaagatacttctcactcgttt |
13064947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #17
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 265 - 451
Target Start/End: Original strand, 19727461 - 19727647
Alignment:
| Q |
265 |
cagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattac |
364 |
Q |
| |
|
|||||| | ||||| |||||||||||||| |||||||||||||||||||| || || |||||||| |||||| ||||||| | ||||| || ||||| | |
|
|
| T |
19727461 |
cagttatctttgatttcttgaataattttggcttcgacaataggatgagtcgaaacaagccaaaaaaaccaactgagacctgtactaactgggccatttc |
19727560 |
T |
|
| Q |
365 |
ctgcagccaagagattgagagcagtgtctctaatatacgtctcattcgtttcgccctttcccaatctttccttcattagttctttta |
451 |
Q |
| |
|
|||| |||||| |||| | ||||||||| |||| |||||||| |||| |||||||| ||| ||||||||||||| |||||| |
|
|
| T |
19727561 |
ctgctaaaaagagagtgagtaaattgtctctaagatacttctcattcatttccccctttccagatccttccttcattagtgctttta |
19727647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #18
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 280 - 452
Target Start/End: Original strand, 13214142 - 13214314
Alignment:
| Q |
280 |
tcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagat |
379 |
Q |
| |
|
|||||||||||||| ||||| |||||| |||||||||| || ||||| || |||||| ||||||| |||| || || ||||| ||||| |||||| |
|
|
| T |
13214142 |
tcttgaataattttagcttccacaataagatgagttgaaacaagccagaaaaaccaaatgagacctgaacgaactgggccatttcctgctaaaaagagag |
13214241 |
T |
|
| Q |
380 |
tgagagcagtgtctctaatatacgtctcattcgtttcgccctttcccaatctttccttcattagttcttttac |
452 |
Q |
| |
|
||| ||| ||||||||| |||| |||||| | |||| |||||||| |||| ||||||||||||| ||||||| |
|
|
| T |
13214242 |
tgatcgcattgtctctaagatacttctcatccatttccccctttccaaatccttccttcattagtgcttttac |
13214314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 280 - 409
Target Start/End: Complemental strand, 13070045 - 13069916
Alignment:
| Q |
280 |
tcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccattacctgcagccaagagat |
379 |
Q |
| |
|
|||||||||||||| ||||| ||||||||||||||||| || ||||| || |||||| ||||||| ||| ||| ||| ||||| ||||| |||||| |
|
|
| T |
13070045 |
tcttgaataattttggcttccacaataggatgagttgaaacaagccagaaaaaccaactgagacctgaagtaactgtgccatttcctgctaaaaagagag |
13069946 |
T |
|
| Q |
380 |
tgagagcagtgtctctaatatacgtctcat |
409 |
Q |
| |
|
||| ||| ||||||||| |||| |||||| |
|
|
| T |
13069945 |
agagtgcattgtctctaagatacttctcat |
13069916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 264 - 451
Target Start/End: Original strand, 13101307 - 13101494
Alignment:
| Q |
264 |
acagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaactaattgttccatta |
363 |
Q |
| |
|
||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| || || ||||| || |||||| ||||| | ||||||| || ||||| |
|
|
| T |
13101307 |
acagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccagaaaaaccaactgagagctgaactaactgggccattt |
13101406 |
T |
|
| Q |
364 |
cctgcagccaagagattgagagcagtgtctctaatatacgtctcattcgtttcgccctttcccaatctttccttcattagttctttta |
451 |
Q |
| |
|
||||| |||||| ||| || ||||||||| |||| |||||| | |||| |||||||| ||| ||||||| ||||| |||||| |
|
|
| T |
13101407 |
cctgctaaaaagagagtgattacattgtctctaagatacttctcatccatttccccctttccagatccttccttcgttagtgctttta |
13101494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 264 - 351
Target Start/End: Original strand, 13204766 - 13204853
Alignment:
| Q |
264 |
acagttaaccttgatctcttgaataatttttgcttcgacaataggatgagttgatacgagccaaaagaaccaattgagacccgaacta |
351 |
Q |
| |
|
||||||| | ||||| |||||||| ||||| ||||| |||||||||||||| || || |||||||| |||||| | ||||| |||||| |
|
|
| T |
13204766 |
acagttatctttgatttcttgaattattttggcttccacaataggatgagtggaaacaagccaaaaaaaccaacttagacctgaacta |
13204853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 505 - 584
Target Start/End: Complemental strand, 13244186 - 13244107
Alignment:
| Q |
505 |
tcttcatcgcctttgtaataagatatacatttgttcaagaattcgtgaagattttctttagctaccgtgcccttcatctc |
584 |
Q |
| |
|
||||||| |||||||||| || ||||||||| | |||||||| ||||||||||||| ||||| || |||||||| |||| |
|
|
| T |
13244186 |
tcttcatttcctttgtaatcagttatacatttctccaagaattggtgaagattttctctagctgccttgcccttcttctc |
13244107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 497 - 570
Target Start/End: Original strand, 13086656 - 13086732
Alignment:
| Q |
497 |
ttcttttctcttcatcgcctttg---taataagatatacatttgttcaagaattcgtgaagattttctttagctacc |
570 |
Q |
| |
|
||||| |||||||||| |||||| ||||||| |||||||||| |||||||| |||||||||||||| ||||||| |
|
|
| T |
13086656 |
ttcttctctcttcatcacctttggaataataagttatacatttggacaagaattggtgaagattttcttgagctacc |
13086732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 368
Target Start/End: Complemental strand, 31396548 - 31396456
Alignment:
| Q |
277 |
atctcttgaataatttttgcttcgacaataggatgagttg-atacgagccaaaagaaccaattgagacccgaactaattgttccattacctgc |
368 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||| | || ||||| || |||||| ||||| ||||||||||| ||||| ||||| |
|
|
| T |
31396548 |
atctcttgaataattttggcttccacattaggatgagttgaaaacaagccagaaaaaccaaccgagacttgaactaattgtgccatttcctgc |
31396456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 160 - 197
Target Start/End: Original strand, 36668331 - 36668368
Alignment:
| Q |
160 |
ggtggataaagccttaaggcttcaaatatagctccatg |
197 |
Q |
| |
|
|||||||||||||||||||||||| ||| ||||||||| |
|
|
| T |
36668331 |
ggtggataaagccttaaggcttcacataaagctccatg |
36668368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University