View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15350_low_4 (Length: 527)
Name: NF15350_low_4
Description: NF15350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15350_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 15 - 513
Target Start/End: Original strand, 7540004 - 7540502
Alignment:
| Q |
15 |
gataagggtacacttcttttagctacagttggtattgggataagccaaactttattcacattactatcatgttttttgttggataaaattgggagaagga |
114 |
Q |
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| T |
7540004 |
gataagggtacacttcttttagctacagttggtattgggataagccaaactttattcacattactatcatgttttttgttggataaaattgggagaagga |
7540103 |
T |
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| Q |
115 |
ttctattattggtcagttcaggaggtgtgattttttctatgttagggttatgtgtttgttcagctatagtggagaattctaaattaggagaagaaccatt |
214 |
Q |
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| T |
7540104 |
ttctattattggtcagttcaggaggtgtgattttttctatgttagggttatgtgtttgttcagctatagtggagaattctaaattaggagaagaaccatt |
7540203 |
T |
|
| Q |
215 |
atgggccataatatttactattattgttatatacattatggcaggttttaatgctattggaattggggctgtgacatgggtttatagcacagagatattt |
314 |
Q |
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| T |
7540204 |
atgggccataatatttactattattgttatatacattatggcaggttttaatgctattggaattggggctgtgacatgggtttatagcacagagatattt |
7540303 |
T |
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| Q |
315 |
ccactaaggttgagagcacaaggacttggggtttgtgtgattatgaatagaattactaatgtggcagtggttactagttttatttcaatttataaaacta |
414 |
Q |
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| T |
7540304 |
ccactaaggttgagagcacaaggacttggggtttgtgtgattatgaatagaattactaatgtggcagtggttactagttttatttcaatttataaaacta |
7540403 |
T |
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| Q |
415 |
taacattgggtggaactttctttttgtttgttggtacaaatgttttgggttggtggttttactattctttcttgcctgaaactaaaggaagatcattag |
513 |
Q |
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| T |
7540404 |
taacattgggtggaactttctttttgtttgttggtacaaatgttttgggttggtggttttactattctttcttgcctgaaactaaaggaagatcattag |
7540502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 392 - 504
Target Start/End: Complemental strand, 33161361 - 33161249
Alignment:
| Q |
392 |
ttttatttcaatttataaaactataacattgggtggaactttctttttgtttgttggtacaaatgttttgggttggtggttttactattctttcttgcct |
491 |
Q |
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|||||||||||| |||||| |||| ||| | ||||||| ||| || |||||| ||||| | |||||| | ||||| ||||| ||| | |||| | ||| |
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| T |
33161361 |
ttttatttcaatctataaagctatcacaataggtggaagttttttcatgtttgctggtatatctgttttagcttggttgtttttctactttttccttcct |
33161262 |
T |
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| Q |
492 |
gaaactaaaggaa |
504 |
Q |
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| T |
33161261 |
gaaactaaaggaa |
33161249 |
T |
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