View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15350_low_5 (Length: 518)
Name: NF15350_low_5
Description: NF15350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15350_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 424; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 424; E-Value: 0
Query Start/End: Original strand, 22 - 501
Target Start/End: Original strand, 27576974 - 27577452
Alignment:
| Q |
22 |
gattattctagatagactaccttacatggagttgaagaatggttttgaggtatgtggtattttgtcggacttttacatgtccacgaaagaaatgttagat |
121 |
Q |
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| T |
27576974 |
gattattctagatagactaccttacatggagttgaagaatggttttgaggtatgtggtattttgtcggacttttacatgtccacgaaagaaatgttagat |
27577073 |
T |
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| Q |
122 |
ggaaattttttggttttgttcgtttatgtgatgtgagggataaaaataaattgttggtagctttaaataatattcggcttgggcaatatcgagtttggac |
221 |
Q |
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| T |
27577074 |
ggaaattttttggttttgttcttttatgtgatgtgagggataaaaataaattgttggtagctttaaataatattcggcttaggcaatatcgagtttggac |
27577173 |
T |
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| Q |
222 |
taattatgcatgctttgatcgagatcgctcacctattgagaccattaaggatggcaatgtggaggtgagggaggatggggtgaaaggggctagagtggag |
321 |
Q |
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| T |
27577174 |
taattatgcatgctttgatcgagatcgctctcctattgagaccattaaggatggcaatgtggaggtgagggaggatggggtgaaaggggctagagtggag |
27577273 |
T |
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| Q |
322 |
ggagaagaaattgtaaggattgaacatggtgagatannnnnnnnnnnnnaaattgacagttttagtccctccatggactatttagtctaaaatatggtgg |
421 |
Q |
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| T |
27577274 |
ggagaagaaattgtaaggattgaacatggtgagata-ttttttttttttaaattgacagttttagtccctccatggactatttagtctaaaatatggtgg |
27577372 |
T |
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| Q |
422 |
tatatatgacatgttttaaattatgtttttaatgaaattttcttataatttattctctttattcatcttaagattatata |
501 |
Q |
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| T |
27577373 |
tatatatgacatgttttaaattatgtttttaatgaaattttcttataatttattctctttattcatcttaagattatata |
27577452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 374 - 453
Target Start/End: Original strand, 1602703 - 1602778
Alignment:
| Q |
374 |
ttgacagttttagtccctccatggactatttagtctaaaatatggtggtatatatgacatgttttaaattatgtttttaa |
453 |
Q |
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| T |
1602703 |
ttgacagttttggtccctccatcaaatatttggtctaaaatatggtg----atatgatatgttttcaattaagtttttaa |
1602778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 431 - 474
Target Start/End: Original strand, 48527087 - 48527130
Alignment:
| Q |
431 |
catgttttaaattatgtttttaatgaaattttcttataatttat |
474 |
Q |
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| T |
48527087 |
catgttttaaatgatgtttttaaagaaattttcttacaatttat |
48527130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 467
Target Start/End: Original strand, 45871774 - 45871860
Alignment:
| Q |
377 |
acagttttagtccctccatggactatttagtctaaaatatggtggtatatatgacatgttttaaattatgtttttaatgaaattttcttat |
467 |
Q |
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| T |
45871774 |
acagttttggtccctctatataatattttgtctaaaatatggtgatata----acatgttttaaatgaagtttttaaagtaattttcttat |
45871860 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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