View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15350_low_6 (Length: 387)
Name: NF15350_low_6
Description: NF15350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15350_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 93 - 321
Target Start/End: Complemental strand, 35589056 - 35588819
Alignment:
| Q |
93 |
tgttatcgactaaactagaatatctcacaattagttacaatttgctactgatccttgttgttctcatcctaatccttattgttcctatcaattagtttag |
192 |
Q |
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| T |
35589056 |
tgttatcgactaaactagaatatctcacaattagttacaatttgctactggtccttgttgttctcatcctaatccttattgttcctatcaattagtttag |
35588957 |
T |
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| Q |
193 |
ctttcctatacattagtttagcttcctcttagtttggtttttctgttaatacttgtacag---------ctgtgatttattcatcaatatacataacaaa |
283 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
35588956 |
ctttcctatacattagttcagcttcctcttagtttggtttttctgttaatacttgtacagtatattaacctgtgatttattcatcaatatacataacaaa |
35588857 |
T |
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| Q |
284 |
aacttctatcaatttgctctctgcatactttctttaca |
321 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35588856 |
aacttctatcaatttgctctctgcatactttctttaca |
35588819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 92
Target Start/End: Original strand, 42036997 - 42037072
Alignment:
| Q |
17 |
aggaacatgcatcattgattcttgcttgtcgtttaagaagtgattctcctaagccatgaccaacgggagtggagtg |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42036997 |
aggaacatgcatcattgattcttgcttgtcgtttaagaagtgattctcctaagccatgaccaacgggagtggagtg |
42037072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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