View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15350_low_9 (Length: 210)
Name: NF15350_low_9
Description: NF15350
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15350_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 105; Significance: 1e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 40378990 - 40379127
Alignment:
| Q |
18 |
ggaactagactattctagaatccttcaagnnnnnnngattattctagaaagtatcgtcgaattgaaagccagactaattgaacgatatttgtatctatga |
117 |
Q |
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| T |
40378990 |
ggaacaagactattctagaatccttcaagaaaaaaagattattctagaaagtatcgtcgaattgaaagccagactaattgaacgatatttgtatctgtga |
40379089 |
T |
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| Q |
118 |
tcaacattgatttgaaaaaatataatttacatttctaa |
155 |
Q |
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| T |
40379090 |
tcaacattgatttgaaaaaatatgatttacatttctaa |
40379127 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 142 - 196
Target Start/End: Original strand, 40379142 - 40379196
Alignment:
| Q |
142 |
atttacatttctaatcaatcaaacattacaaaactaatgcaaatcgtaatctgtg |
196 |
Q |
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| T |
40379142 |
atttacatttctaatcaatcaaacattacaaaactaatgcaaatcgtaatctgtg |
40379196 |
T |
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