View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_high_17 (Length: 393)
Name: NF15351_high_17
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 210
Target Start/End: Complemental strand, 17687296 - 17687097
Alignment:
| Q |
11 |
cacagaagaaccaaaacaatgttaaataaagaaaggggcatgccgacaaagtcaacggatagaatcaaggctgagatgatgatcgagtagagaccggaaa |
110 |
Q |
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| T |
17687296 |
cacagaagaacaaaaacaatgttaaataaagaaaggggcatgccgacaaagtcaactgatagaatcaaggctgagatgatgatcgagtagagaccggaaa |
17687197 |
T |
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| Q |
111 |
cactgttttgacgttttggcttagcagaatcaaaccgggtgtggtctcgcacaaaggatttgggcctgatgaaggatccaaaggcgtgataggcatgagg |
210 |
Q |
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| T |
17687196 |
cactgttttgacgttttggcttagcagaatcaaaccgggtgtggtttcgcacaaaggatttgggcctgatgaaggatccaaaggcgtgataggcatgagg |
17687097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 238 - 375
Target Start/End: Complemental strand, 17683958 - 17683820
Alignment:
| Q |
238 |
gatgcaatcaccattttcatcagttaataatatgttgcatgnnnnnnnatcgcaaaacaatatgtcagacaatctcataagtcactattggtt-nnnnnn |
336 |
Q |
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| T |
17683958 |
gatgcaatcaccattttcatcaattaataatatattgcatgtttttttatcgcaaaacaatatgtcagacaatctcataagtcactattggttaaaaaaa |
17683859 |
T |
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| Q |
337 |
nnttacataacacgtttgaataacgtagaaaacaaatgc |
375 |
Q |
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| T |
17683858 |
aattacataacacgtttgaataacgtagaaaacaaatgc |
17683820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 196 - 242
Target Start/End: Complemental strand, 17687074 - 17687028
Alignment:
| Q |
196 |
gtgataggcatgaggcctgatgaaggattcaaacgtcatattgatgc |
242 |
Q |
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| T |
17687074 |
gtgataggcatgaggcctgatgaaggattcaaacgtcatattgatgc |
17687028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 1557443 - 1557296
Alignment:
| Q |
11 |
cacagaagaaccaaaacaatgttaaataaagaaaggggcatgccgacaaagtcaacggatagaatcaaggctgagatgatgatcgagtagagaccggaaa |
110 |
Q |
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|||||||||||| ||||||||| ||||||| |||||||||| ||||||||||| || |||||||||||||||||||||| |||||||| ||||| ||||| |
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| T |
1557443 |
cacagaagaaccgaaacaatgtaaaataaaaaaaggggcataccgacaaagtcgacagatagaatcaaggctgagatgacgatcgagtggagactggaaa |
1557344 |
T |
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| Q |
111 |
cactgttttgacgttttggcttagcagaatcaaaccgggtgtggtctc |
158 |
Q |
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| T |
1557343 |
caatgatttgacgtttttgcttagcagaatcaaaccaggtgcggtctc |
1557296 |
T |
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