View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_high_18 (Length: 386)
Name: NF15351_high_18
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 20 - 375
Target Start/End: Complemental strand, 54885863 - 54885508
Alignment:
| Q |
20 |
aatgaggtaaggatattcccaccatgaaggaacgagatcatgtatggtattatggaaacagatcatgtatttagctaatcttaaagtcacttttaaactc |
119 |
Q |
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| T |
54885863 |
aatgaggtaaggatattcccaccatgaaggaacgagatcatgtatggtattatggaaacagatcatgtatttagctaatcttaaagtcacttttaaactc |
54885764 |
T |
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| Q |
120 |
aatgtaaggatgaagcattattagaaagtttaaacaagaattttttatcgagccgtgttaactaattgtggtaaaaatgcttctttccaatattcaaagt |
219 |
Q |
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| T |
54885763 |
aatgtaaggatgaaacattattagaaagtttaaacaagaattttttatcgagccgtgttaactaattgtggtaaaaatgcttctttccaatattcaaagt |
54885664 |
T |
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| Q |
220 |
ttaaggtagaagtagaatagcaaggttgttggtggtgctgtgctgagttacttgtggccaagtcccacatcgttggatggaaacaacagacaccagagac |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54885663 |
ttaaggtagaagtagaatagcaaggttgttggtggtgctgtgctgagttacttgtggccaagtcccacatcgttggatggaaacaacagacaccagagac |
54885564 |
T |
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| Q |
320 |
ttaagtataaataaagtgctttgaacaacgactattacatagcgttctcaacctat |
375 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
54885563 |
ttaagtataaataaagtgctttgaacaacgaccattacatagcgttctcagcctat |
54885508 |
T |
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