View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15351_high_2 (Length: 771)
Name: NF15351_high_2
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_high_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 615
Target Start/End: Complemental strand, 13476693 - 13476091
Alignment:
| Q |
15 |
gggtgtcttacaagatgattctaatatagatttgtttgtaggtgaatttgtttatatattaaaaaattaaacaacttcattgtaataatataaactatca |
114 |
Q |
| |
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|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
13476693 |
gggtatcttacaagatgattttaatatagatttgtttgtaggtgaatttgtttatatattaaaaaattaaacaacttcatcgtaataatataaactatca |
13476594 |
T |
|
| Q |
115 |
cgctattaggctattgtttattcaattcaaacattattggtttactaactactattgggaaaaagagagagaatatgttagaaataacttcaaggcaaaa |
214 |
Q |
| |
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| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13476593 |
cactatgaggctattgtttattcaattcaaacattattggtttactaactactattgggaaaaagagagagaatatgttagaaataacttcaaggcaaaa |
13476494 |
T |
|
| Q |
215 |
aatcgttgtca--gagttagacaatactccctctgatcacattcatagggnnnnnnntaacttttaggttcattgataactaatgtatgtggccgccacg |
312 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13476493 |
aatcgttgtcatagagttagacaatactccctctgatcacattcataagaaaaaaaataacttttaggttcattgataactaatgtatgtggccgccacg |
13476394 |
T |
|
| Q |
313 |
tgtggacaggggatgaccatggccatcccattaatttagggttgaaattactatcatatctctgagctaaattgaaaattacaatcatgtcattttcttt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13476393 |
tgtggacaggggatgaccatggccatcccattaatttagggttgaaattactatcatacctctgagctaaattgaaaattacaatcatgtcattttcttt |
13476294 |
T |
|
| Q |
413 |
tctaaaggctgaagcgtgacaccttcttctccctctgctaattcaatacgaccatcacccatcacctatcctcagtcacaccgcaaccgtgttcgtcgct |
512 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
13476293 |
tctaaaggctgaagcgtgacaccttcttctccctctgctaattcaatacgaccatcacccatcacctatcctcagtcacaccgcaaccgtgttcgtcgct |
13476194 |
T |
|
| Q |
513 |
ttctctaactctccgtcgaagttgaagcccaccaatctctgaaatgaatcgtcatctgtctccatctcacgaaccctagttgagtaagtataaattactt |
612 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13476193 |
ttctctaactctccgtcgaaattgaagcccaccaatctctgaaatgaatcgtcatctgtctccatctcacgaaccctagttgagtaagtataaattactt |
13476094 |
T |
|
| Q |
613 |
tcc |
615 |
Q |
| |
|
||| |
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|
| T |
13476093 |
tcc |
13476091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 694 - 771
Target Start/End: Complemental strand, 13476012 - 13475935
Alignment:
| Q |
694 |
cataaccctaatcgaaaccaaagggaaaaaggaaatcacaacccattcattcattatgctgatatgatcctttttaac |
771 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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|
| T |
13476012 |
cataaccctaatcaaaaccaaagggaaaaaggaaatcacaacccattcattcattatgctcatatgatcctttttaac |
13475935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 85; Significance: 4e-40; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 26 - 238
Target Start/End: Original strand, 54944021 - 54944235
Alignment:
| Q |
26 |
aagatgattctaatatagatttgtttgtaggtgaatttgtttatatattaaaaaa-ttaaacaacttcattgtaataatataaactatcacgctattagg |
124 |
Q |
| |
|
||||||||| | | ||||||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||| ||| | |
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|
| T |
54944021 |
aagatgattttgacatagatttgttggttggtgaatttgtttatatattaaaaaaattaaacaacttcatcgtaataatataaaatatcacactacaata |
54944120 |
T |
|
| Q |
125 |
ctattgtttattcaattcaaacattattggtttactaactactattgggaaaaagagagagaatatgttagaaataacttcaaggcaaaaaatcgttgtc |
224 |
Q |
| |
|
|||||||||||| | ||| | ||||||||||||||||| |||||| ||||| ||||| |||||||||||||||||||||| | ||||||| |||||| |
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|
| T |
54944121 |
atattgtttattctactcaggcgttattggtttactaactgctattgaaaaaaaaagagaaaatatgttagaaataacttcaaag-aaaaaattgttgtc |
54944219 |
T |
|
| Q |
225 |
--agagttagacaata |
238 |
Q |
| |
|
| |||||||||||| |
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|
| T |
54944220 |
gtatagttagacaata |
54944235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 308 - 361
Target Start/End: Original strand, 54486273 - 54486326
Alignment:
| Q |
308 |
ccacgtgtggacaggggatgaccatggccatcccattaatttagggttgaaatt |
361 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
54486273 |
ccacatgtggacaggggatggccatggccatcccattaatttagggttgaaatt |
54486326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 771
Target Start/End: Original strand, 54486627 - 54486703
Alignment:
| Q |
694 |
cataaccctaatcgaaaccaaagggaaaaaggaaatcacaacccattcattcattatgctgatatgatcctttttaac |
771 |
Q |
| |
|
||||| ||| ||| |||||||||||||||||||||||||||| | ||| ||||||||||||||||||| |||||||| |
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|
| T |
54486627 |
cataatcctgatcaaaaccaaagggaaaaaggaaatcacaactgactca-tcattatgctgatatgatcttttttaac |
54486703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 547 - 615
Target Start/End: Original strand, 54486469 - 54486536
Alignment:
| Q |
547 |
atctctgaaatgaatcgtcatctgtctccatctcacgaaccctagttgagtaagtataaattactttcc |
615 |
Q |
| |
|
|||||| ||||||||| |||| |||||| |||| || |||||||||||||||||| ||||||||||||| |
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|
| T |
54486469 |
atctctaaaatgaatcttcatttgtctc-atcttacaaaccctagttgagtaagtgtaaattactttcc |
54486536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 74; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 74; E-Value: 2e-33
Query Start/End: Original strand, 333 - 450
Target Start/End: Complemental strand, 23623686 - 23623570
Alignment:
| Q |
333 |
ggccatcccattaatttagggttgaaattactatcatatctctgagctaaattgaaaattacaatcatgtcattttcttttctaaaggctgaagcgtgac |
432 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||||| |||| | |||||||||| |||||||||||||||| |
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|
| T |
23623686 |
ggccatcccattaatttaaggttgaaattactattatacccctgagctaaattgaaaattacaaacatggtagtttcttttctgaaggctgaagcgtgac |
23623587 |
T |
|
| Q |
433 |
accttcttctccctctgc |
450 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
23623586 |
a-cttcttctccctctgc |
23623570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 345
Target Start/End: Original strand, 11033497 - 11033535
Alignment:
| Q |
307 |
gccacgtgtggacaggggatgaccatggccatcccatta |
345 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||||||| |
|
|
| T |
11033497 |
gccacgtgtggacagggaatggccatggccatcccatta |
11033535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 307 - 542
Target Start/End: Original strand, 51447973 - 51448206
Alignment:
| Q |
307 |
gccacgtgtggacaggggatgaccatggccatcccattaatttagggttgaaattactatcatatctctgagctaaattgaaaattacaatcatgtcatt |
406 |
Q |
| |
|
|||||||| |||| | ||||| |||| ||| |||||||||||||||||||||||| || ||| | |||| |||| ||||||||||||| |||| |||| |
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|
| T |
51447973 |
gccacgtgaggactgaggatggccatagcctccccattaatttagggttgaaattatcattatacccctgaactaatttgaaaattacaaacatg-catt |
51448071 |
T |
|
| Q |
407 |
ttcttttctaaaggctgaagcgtgacaccttcttctccctctgctaattcaatacgaccatcacccatcacctatcctcagtcacaccgcaaccgtgttc |
506 |
Q |
| |
|
||||||| | |||||| ||| |||||||||||||||| |||| | ||| | ||||| || | |||||| || ||| |||| |||||||||||||| |
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|
| T |
51448072 |
ttcttttatgaaggctaaagtgtgacaccttcttctcactctagtgattttgtgcgacctccatcgatcaccaattttcaatcacgccgcaaccgtgttc |
51448171 |
T |
|
| Q |
507 |
gtcgctttctctaactctccgtcgaagttgaagccc |
542 |
Q |
| |
|
||||| |||||||||||||||| || ||||||||| |
|
|
| T |
51448172 |
gtcgccatctctaactctccgtc-aaattgaagccc |
51448206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 694 - 769
Target Start/End: Original strand, 51448402 - 51448477
Alignment:
| Q |
694 |
cataaccctaatcgaaaccaaagggaaaaaggaaatcacaacccattcattcattatgctgatatgatccttttta |
769 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
51448402 |
cataaccctaatcaaaacaaaagggaaaaaggaaatcataaccgattcattcattatgctgatatgatctttttta |
51448477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 57 - 210
Target Start/End: Original strand, 10723586 - 10723747
Alignment:
| Q |
57 |
tgaatttgtttatatattaaaaaattaaacaacttcattgtaataatataaactatcacgctattaggctattgtttattcaattcaaacattattggtt |
156 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| |||||||||||||||| | ||| || |||||||||| || ||||| |||||| | ||| |
|
|
| T |
10723586 |
tgaatttgtttatatatgaaaaaattaaacaacttcatcataataatataaactattagactaaaagcctattgtttaatctattcagacattacttgtt |
10723685 |
T |
|
| Q |
157 |
tactaactactattg--------ggaaaaagagagagaatatgttagaaataacttcaaggc |
210 |
Q |
| |
|
| ||| |||||||| ||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
10723686 |
aaataattactattgaaaaaaaaataaaaacagagagaatatgttataaataacttcaaggc |
10723747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 82 - 136
Target Start/End: Original strand, 49965335 - 49965389
Alignment:
| Q |
82 |
taaacaacttcattgtaataatataaactatcacgctattaggctattgtttatt |
136 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||| |||| | ||||||||||||| |
|
|
| T |
49965335 |
taaacaatttcatcgtaataatataaactatcacactatgatgctattgtttatt |
49965389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 23368072 - 23368169
Alignment:
| Q |
122 |
aggctattgtttattcaattcaaacattattggtttactaactactattg----ggaaaaagagagagaatatgttagaaataacttcaaggcaaaaa |
215 |
Q |
| |
|
|||||||||||||||| ||||| |||||| ||||| | |||||||| | | | ||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
23368072 |
aggctattgtttattctattcagacattactggttaaataactactttggaagagaaaaaagagagagaatatgttagaaataacttcaaggccaaaa |
23368169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 307 - 349
Target Start/End: Complemental strand, 13627454 - 13627412
Alignment:
| Q |
307 |
gccacgtgtggacaggggatgaccatggccatcccattaattt |
349 |
Q |
| |
|
|||||||| |||||||||||| ||||||||| ||||||||||| |
|
|
| T |
13627454 |
gccacgtgaggacaggggatggccatggccaccccattaattt |
13627412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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