View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_high_20 (Length: 346)
Name: NF15351_high_20
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 13 - 327
Target Start/End: Original strand, 43287355 - 43287669
Alignment:
| Q |
13 |
aatataactgagttggaatgatgaatgatcgattaaagaatgatactggttttgtttctaatggaaaccatagcaaaatatcacaattttgttgctctaa |
112 |
Q |
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| T |
43287355 |
aatataactgagttggaatgatgaatgatcgattaaagaatggtactggttttgtttctgatgggaaccatagcaaaatatcacaattttgttgctctaa |
43287454 |
T |
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| Q |
113 |
tccaaactgaaattcatggaacaatttatattaaataactagtgtttttattttgtcaagatgtttatgtttcaagtataaaatgtttaaaataaacata |
212 |
Q |
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| T |
43287455 |
tccaaactgaaattcatggaacaatttatattaaataactagtgtttttattttgtcaagatatttatgtttcaagtataaaatgtttaaaataaacata |
43287554 |
T |
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| Q |
213 |
tgaaatattactatacacataatttgctgcaaaccaattaatcaaaaatgaacatgaaggaaaacagaagagcagatgaaaatgatggaaatgtgtgtat |
312 |
Q |
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| T |
43287555 |
agaaatattactatacacataatttgctacaaaccaattaatcaaaaatgaacatgaaggaaaatagaaaagcagatgaaaatgatggaaatgtgtgtat |
43287654 |
T |
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| Q |
313 |
tattgatgatatagg |
327 |
Q |
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| T |
43287655 |
tattgatgatatagg |
43287669 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 323
Target Start/End: Original strand, 23052145 - 23052183
Alignment:
| Q |
285 |
cagatgaaaatgatggaaatgtgtgtattattgatgata |
323 |
Q |
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| T |
23052145 |
cagatgaaattgatggaaatatgtgtattattgatgata |
23052183 |
T |
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