View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15351_high_22 (Length: 342)

Name: NF15351_high_22
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15351_high_22
NF15351_high_22
[»] chr6 (1 HSPs)
chr6 (153-328)||(24998891-24999065)
[»] chr2 (1 HSPs)
chr2 (107-290)||(38979700-38979883)
[»] chr3 (2 HSPs)
chr3 (107-290)||(51423942-51424126)
chr3 (154-290)||(11685962-11686097)
[»] chr8 (2 HSPs)
chr8 (154-290)||(8211560-8211695)
chr8 (107-290)||(9289755-9289939)
[»] scaffold0442 (1 HSPs)
scaffold0442 (107-290)||(13036-13222)
[»] chr4 (3 HSPs)
chr4 (154-290)||(7055248-7055384)
chr4 (107-290)||(14463069-14463253)
chr4 (107-143)||(7055398-7055434)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 153 - 328
Target Start/End: Original strand, 24998891 - 24999065
Alignment:
Q  153 cccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatata 252  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||    
T  24998891 cccttatatgcatttgaactccttaggaacaaattatattaccatcatgaatgtg-cttttttggttaatcctctatgtgcaacagttagagtatatata 24998989  T
Q  253 tgcaagttatgctttgaagagttcttatgttaattttannnnnnnaataatgacagtgttcttttatatccacagg 328  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||    
T  24998990 tgcaagttatgctttgaagagttcttatgttaattttatttttttaataatgacagtgttcttttatatccacagg 24999065  T

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Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 107 - 290
Target Start/End: Original strand, 38979700 - 38979883
Alignment:
Q  107 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgt 206  Q
    ||||||||||||| ||||||||||||||||||||||| |        ||||||||||||||||| ||||   |||||||||| |||||||||| ||||||    
T  38979700 atatagtagaagtagcttcatagatgttgtattttatagtgttttttccttatatgcatttgaattcctcgagaatgaattacattaccatcacgaatgt 38979799  T
Q  207 ggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 290  Q
    |         |||||||||||| |||| ||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  38979800 gtttttttttgttaatcctctaggtgcgacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 38979883  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 107 - 290
Target Start/End: Original strand, 51423942 - 51424126
Alignment:
Q  107 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 204  Q
    ||||||||||||| |||||||||||||| ||||||||  ||        ||||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  51423942 atatagtagaagtggcttcatagatgttttattttatagtgttttttttccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 51424041  T
Q  205 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 290  Q
    |||        ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  51424042 gtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 51424126  T

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Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 11685962 - 11686097
Alignment:
Q  154 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 253  Q
    ||||||||||||||||| ||||  | || |||||| ||||||||||||||||||        ||||||||||||| |||||| ||||||||||| |||||    
T  11685962 ccttatatgcatttgaattcctcggcaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaagagttagagtatgtatat 11686060  T
Q  254 gcaagttatgctttgaagagttcttatgttaatttta 290  Q
    |||||||||||||||| || |||||||||||||||||    
T  11686061 gcaagttatgctttgatgatttcttatgttaatttta 11686097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 154 - 290
Target Start/End: Original strand, 8211560 - 8211695
Alignment:
Q  154 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 253  Q
    ||||||||||||||||| ||||    || |||||| ||||||||||||||||||        ||||||||||||| |||||||||||||||||| ||| |    
T  8211560 ccttatatgcatttgaattcctcgacaacgaattacattaccatcatgaatgtg-tttttttggttaatcctctaggtgcaacagttagagtatgtatct 8211658  T
Q  254 gcaagttatgctttgaagagttcttatgttaatttta 290  Q
    |||||||||||||||| ||||||||||||||||||||    
T  8211659 gcaagttatgctttgatgagttcttatgttaatttta 8211695  T

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Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 107 - 290
Target Start/End: Original strand, 9289755 - 9289939
Alignment:
Q  107 atatagtagaagttgcttcatagatgttgtattttat--tgnnnnnnncccttatatgcatttgaactccttaggaatgaattatattaccatcatgaat 204  Q
    ||||||||||||| |||||||||||||| ||||||||  ||         |||||||||||||||| ||||  | || |||||| |||||||||||||||    
T  9289755 atatagtagaagtggcttcatagatgttttattttatagtgattttttttcttatatgcatttgaattcctcggcaacgaattacattaccatcatgaat 9289854  T
Q  205 gtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 290  Q
     ||        ||||||||||||| |||||||||||||||| | ||| ||||||||||||||||| ||||||||||||||||||||    
T  9289855 atg-tttttttggttaatcctctaggtgcaacagttagagtttgtatctgcaagttatgctttgatgagttcttatgttaatttta 9289939  T

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Target: scaffold0442 (Bit Score: 57; Significance: 9e-24; HSPs: 1)
Name: scaffold0442
Description:

Target: scaffold0442; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 107 - 290
Target Start/End: Complemental strand, 13222 - 13036
Alignment:
Q  107 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc----ccttatatgcatttgaactccttaggaatgaattatattaccatcatga 202  Q
    ||||||||||||| ||||||||||||||||||||||| |            ||||||||||||||||| ||||  | || |||||| |||||||||| ||    
T  13222 atatagtagaagtggcttcatagatgttgtattttatagtgttttttttttccttatatgcatttgaattcctcggaaacgaattacattaccatcacga 13123  T
Q  203 atgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 290  Q
    |||||        | |||||| |||| |||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  13122 atgtgttatttttg-ttaatcatctaggtgcaacagttagagtatgtatctgcaagttatgctttgatgagttcttatgttaatttta 13036  T

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Target: chr4 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 154 - 290
Target Start/End: Complemental strand, 7055384 - 7055248
Alignment:
Q  154 ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatgtggnnnnnnnggttaatcctctatgtgcaacagttagagtatatatat 253  Q
    ||||||||||||||||| ||||  |||| |||||| |||||||||| |||||||         |||||||||||| ||||| ||||||| |||| ||| |    
T  7055384 ccttatatgcatttgaattcctcgggaacgaattacattaccatcacgaatgtgtttttttttgttaatcctctaggtgcagcagttagcgtatgtatct 7055285  T
Q  254 gcaagttatgctttgaagagttcttatgttaatttta 290  Q
     ||||||||||||||| ||||||||||||||||||||    
T  7055284 tcaagttatgctttgatgagttcttatgttaatttta 7055248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 107 - 290
Target Start/End: Complemental strand, 14463253 - 14463069
Alignment:
Q  107 atatagtagaagttgcttcatagatgttgtattttattgnnnnnnnc-ccttatatgcatttgaactccttaggaatgaattatattaccatcatgaatg 205  Q
    ||||||||||||| ||||||||||||||||||||||| |         |||||||| |||||||| ||||  |||| |||||| |||||||||| |||||    
T  14463253 atatagtagaagtggcttcatagatgttgtattttatagtgtttttttccttatattcatttgaattcctcgggaacgaattacattaccatcacgaatg 14463154  T
Q  206 tggnnnnnnng---gttaatcctctatgtgcaacagttagagtatatatatgcaagttatgctttgaagagttcttatgttaatttta 290  Q
    ||            |||||||||||| ||||||||||||||   | ||| ||||||||||||||||| |||||||||||| |||||||    
T  14463153 tgttttttttttttgttaatcctctaggtgcaacagttaga---tgtatctgcaagttatgctttgatgagttcttatgtcaatttta 14463069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 7055434 - 7055398
Alignment:
Q  107 atatagtagaagttgcttcatagatgttgtattttat 143  Q
    ||||||||||| | |||||||||||||||||||||||    
T  7055434 atatagtagaactggcttcatagatgttgtattttat 7055398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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