View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_high_27 (Length: 308)
Name: NF15351_high_27
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_high_27 |
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| [»] chr2 (4 HSPs) |
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| [»] chr5 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 193; Significance: 1e-105; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 11 - 308
Target Start/End: Complemental strand, 4246524 - 4246240
Alignment:
| Q |
11 |
cagagatacaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgcc |
110 |
Q |
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| T |
4246524 |
cagagacacaaacccatgcttgaacatcaaatttctgctgtatactgc-atgattgtatacagattgggctaaagtgatttttcccacaccacccatgcc |
4246426 |
T |
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| Q |
111 |
aactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccctaccaaataag |
210 |
Q |
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| T |
4246425 |
aactatggggatcacagtcatacaagtcttatcatcaacatgatcatcgtc---------------tatggcaattttgtcttgatccctaccaaataag |
4246341 |
T |
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| Q |
211 |
ttagattcgctgacatctagagaggtggatggagttctcc---aagagaggttatcagttgcaaaatgttgaagaccaagaatatctttgaatttgagaa |
307 |
Q |
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|||||||||| | ||||||||||||||||||||||||||| ||||| ||| ||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
4246340 |
ttagattcgccggcatctagagaggtggatggagttctccaagaagagtggtgatcagttgcaacatgttgaagactaagaatatctttgaatttgagaa |
4246241 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 23 - 308
Target Start/End: Original strand, 4314855 - 4315143
Alignment:
| Q |
23 |
cccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatggggat |
122 |
Q |
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| T |
4314855 |
cccatgcttgaacatcaaatttttgctttatattgtcatggttgtacacagattgggctaaagtagtttttcccacaccacccatgccaactatggggat |
4314954 |
T |
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| Q |
123 |
cacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccctaccaaataagttagattcgctg |
222 |
Q |
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| T |
4314955 |
cacactcacacgagtcttatcatcaacatgatcatcatctaacagtaacttgagcatggccattttgtcttgatccctaccaaataagttagattcgccg |
4315054 |
T |
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| Q |
223 |
acatctagagaggtggatggagttctccaaga---gaggttatcagttgcaaaatgttgaagaccaagaatatctttgaatttgagaat |
308 |
Q |
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| T |
4315055 |
gcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaagaatatctttgaacttgagaat |
4315143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 4305988 - 4306281
Alignment:
| Q |
18 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
117 |
Q |
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| T |
4305988 |
acaagcccatgcttgcacatcaaaattttgctttatattgtcattgttgtacacaaattgggctaatatgatttttcccaccccacccatgccaactatg |
4306087 |
T |
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| Q |
118 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccctaccaaataagttagatt |
217 |
Q |
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| T |
4306088 |
gggatcacagtcacacaagtcttatcatcaacatgatcatcatctaacagtaacttgagaatgaccattttgtcttgatccctaccaaataagttagatt |
4306187 |
T |
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| Q |
218 |
cgctgacatctagagaggtggatggagttctccaaga---gaggttatcagttgcaaaatgttgaagaccaagaatatctttgaatttgagaat |
308 |
Q |
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| | | ||||||||||||||||||||||||||||||| | ||| | |||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
4306188 |
caccggcatctagagaggtggatggagttctccaagaagagtggtggtgagttgcaatatgttgaagaccaaaaatatctttgaatttgagaat |
4306281 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 4253635 - 4253354
Alignment:
| Q |
18 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
117 |
Q |
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|||| ||||||||||||||||||| ||||||| ||||||| |||| ||||| ||||||||||||||| | |||||||||||||||||||| ||||||||| |
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| T |
4253635 |
acaagcccatgcttgaacatcaaacttctgctttatactgtcatggttgtacacagattgggctaaaattgtttttcccacaccacccataccaactatg |
4253536 |
T |
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| Q |
118 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccctaccaaataagttagatt |
217 |
Q |
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| T |
4253535 |
gggatcac------gcaagtctta-cagca--atcatcatcatctaacagtaatttgagtatggcctttttgtctgcatccctaccaaatatgttagat- |
4253446 |
T |
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| Q |
218 |
cgctgacatctagagaggtggatggagttctcc---aagagaggttatcagttgcaaaatgttgaagaccaagaatatctttgaatttgagaat |
308 |
Q |
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| ||||||||||||| |||| |||||||| ||||| ||| || |||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4253445 |
--gggtcatctagagaggttgatgaagttctccaagaagagtggtgttcgattgcaatatgttgaagaccaagaatatctttgaatttgagaat |
4253354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 308
Target Start/End: Complemental strand, 41933079 - 41932786
Alignment:
| Q |
18 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
117 |
Q |
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|||| ||||||||||||||||||| || |||| |||| || |||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41933079 |
acaagcccatgcttgaacatcaaacttttgctttatattgtcatggttgtacacagattgggctaaagtggtttttcccaccccacccatgccaactatg |
41932980 |
T |
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| Q |
118 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccctaccaaataagttagatt |
217 |
Q |
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||||||||| ||| ||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||| ||| || ||||||| | |||||| |
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| T |
41932979 |
gggatcacactcacacaagtcttatcatcaacatgatcatcatctaagagtaacttgagtatggcttctttgtctttatctcttccaaatatgctagatt |
41932880 |
T |
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| Q |
218 |
cgctgacatctagagaggtggatggagttctccaaga---gaggttatcagttgcaaaatgttgaagaccaagaatatctttgaatttgagaat |
308 |
Q |
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||| |||| |||||||| ||||| ||||||||||| | ||| ||| | |||| |||||||||||||||||||||||||||||||||||| |
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| T |
41932879 |
cgccagcatcaagagaggttgatggggttctccaagaagagtggtggtcactagcaatatgttgaagaccaagaatatctttgaatttgagaat |
41932786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 18 - 308
Target Start/End: Original strand, 34802891 - 34803169
Alignment:
| Q |
18 |
acaaacccatgcttgaacatcaaatttctgctgtatactgccatgattgtatacagattgggctaaagtggtttttcccacaccacccatgccaactatg |
117 |
Q |
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||||||||||||||||||| | ||||||| || ||||||| |||| |||| |||||||||||||||||||||||||| | |||||||||| ||||||| |
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| T |
34802891 |
acaaacccatgcttgaacaccgaatttcttctttatactgtcatggatgtacacagattgggctaaagtggtttttcctattccacccatgctaactatg |
34802990 |
T |
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| Q |
118 |
gggatcacagtcatacaagtcttatcatcaacatgatcatcgtctaacaataacttgagtatggcaattttgtctcgatccctaccaaataagttagatt |
217 |
Q |
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|||||| | |||||||||||||| | ||| | |||| ||||||| ||| |||||||| || ||||||| |||||| ||||||| |||| || |
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| T |
34802991 |
gggatctc------acaagtcttatcattatcatcaccatcatctaacagtaatttgagtatcgcctctttgtctttatccctgccaaatatgttacat- |
34803083 |
T |
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| Q |
218 |
cgctgacatctagagaggtggatggagttctccaagagaggttatcagttgcaaaatgttgaagaccaagaatatctttgaatttgagaat |
308 |
Q |
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| | ||||||||||||| |||||||||||||||||| || ||| |||||| ||||||||||||||||||||||||||||| ||||| |
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| T |
34803084 |
--ccggcatctagagaggtagatggagttctccaagagtgg---tcacttgcaatgtgttgaagaccaagaatatctttgaattttagaat |
34803169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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