View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_high_28 (Length: 292)
Name: NF15351_high_28
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 8 - 274
Target Start/End: Original strand, 2691895 - 2692176
Alignment:
| Q |
8 |
cagcacagaagcttgtaaaaatctgagactcatcatcttcagaaacaatgnnnnnnnntatatattatcaattgaa---------------ccatacatg |
92 |
Q |
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| T |
2691895 |
cagcacagaagcttgtaaaaatctgagactcatcatcttcagaaacaatgaaaaaaaaaatatattatcaattgaaagagttactcaagaaccatacatg |
2691994 |
T |
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| Q |
93 |
aaaaaatagtgctagtgataaatgataattaaaattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcaccttacctaaatcagaa |
192 |
Q |
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| T |
2691995 |
aaaaaatagtgctagtgataaatgataattaaaattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcaccttacctaaatcagaa |
2692094 |
T |
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| Q |
193 |
tgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatac |
274 |
Q |
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| T |
2692095 |
tgagcaagacgaatatgcaatgtatttccatcaccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatac |
2692176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 178 - 274
Target Start/End: Original strand, 2699779 - 2699875
Alignment:
| Q |
178 |
ttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatac |
274 |
Q |
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| T |
2699779 |
ttacctaaatcagaataagcgagacgaatgtgcagagcgtttccttctccatgttgaaagtgtagaatatcaaccaaatctccataccaaaccatac |
2699875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 125 - 274
Target Start/End: Original strand, 14521101 - 14521250
Alignment:
| Q |
125 |
aattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcaccttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatc |
224 |
Q |
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|||||||| || |||||||||||||||||||| |||||||||||||| | | ||||||||||||||| ||| |||||||||||| || | |||||| || |
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| T |
14521101 |
aattgaagatcaatatacatggaaacaaagctaaaggaaccctttgatgtatcttacctaaatcagactgagcaagacgaatatataacgaatttccttc |
14521200 |
T |
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| Q |
225 |
gccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatac |
274 |
Q |
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| T |
14521201 |
atcgcgtcctaagtgttgaacatcgaccaaatctccatgccaaaccatac |
14521250 |
T |
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