View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15351_high_9 (Length: 456)

Name: NF15351_high_9
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15351_high_9
NF15351_high_9
[»] chr1 (8 HSPs)
chr1 (20-306)||(31908790-31909076)
chr1 (319-449)||(23732005-23732137)
chr1 (321-438)||(17172741-17172857)
chr1 (324-437)||(44769510-44769620)
chr1 (326-449)||(1631717-1631839)
chr1 (349-437)||(1632712-1632799)
chr1 (321-362)||(36390452-36390493)
chr1 (324-389)||(36681532-36681596)
[»] chr2 (7 HSPs)
chr2 (319-449)||(30270132-30270262)
chr2 (22-173)||(18013810-18013962)
chr2 (324-381)||(24890548-24890605)
chr2 (356-409)||(41770470-41770523)
chr2 (356-391)||(34238714-34238749)
chr2 (324-374)||(24889910-24889960)
chr2 (355-409)||(41768834-41768888)
[»] chr8 (3 HSPs)
chr8 (319-446)||(17873469-17873596)
chr8 (319-405)||(44473914-44474000)
chr8 (355-409)||(42294250-42294304)
[»] chr4 (7 HSPs)
chr4 (322-437)||(23638186-23638301)
chr4 (322-437)||(36001825-36001940)
chr4 (349-438)||(36001028-36001117)
chr4 (326-438)||(23637385-23637496)
chr4 (355-437)||(39831956-39832038)
chr4 (356-427)||(46144752-46144823)
chr4 (356-437)||(20422975-20423056)
[»] chr5 (5 HSPs)
chr5 (321-438)||(4908330-4908446)
chr5 (355-437)||(10470096-10470178)
chr5 (355-437)||(43511068-43511150)
chr5 (322-364)||(25593368-25593409)
chr5 (324-364)||(4084001-4084040)
[»] chr3 (3 HSPs)
chr3 (351-437)||(17805-17891)
chr3 (354-437)||(5578792-5578876)
chr3 (349-390)||(53833242-53833283)
[»] chr7 (1 HSPs)
chr7 (355-437)||(45432893-45432975)
[»] scaffold0086 (1 HSPs)
scaffold0086 (355-392)||(8415-8452)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 20 - 306
Target Start/End: Complemental strand, 31909076 - 31908790
Alignment:
Q  20 tgaaagttgtgtaattttatattatttgtacattatttcgtaatattatgaaatggattgttctgttttgcaagttaatgtgcatcagtcacaatagaac 119  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  31909076 tgaaagttgtgtaattttatattatttgtacattatttcgtaacattatgaaatgaattgttctgttttgcaagttaatgtgcatcagtcacaatagaac 31908977  T
Q  120 ctctatatcttgagatagtaactccttttttagtgaaaccaattttgtttgaaaacagacatccaataatttcttcatattaaattgcataattttagcc 219  Q
    |||| ||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31908976 ctctgtatcttgagatagtaactcctttttgagtgaaaccaattgtgtttgaaaacagacatccaataatttcttcatattaaattgcataattttagcc 31908877  T
Q  220 gtataaacaagtctcgataattctgttaacgcactagttttgtcgcagaattttactgtaacattattgagtttacaaaatcacgac 306  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31908876 gtataaacaagtctcgataattctgttaacacactagttttgtcgcagaattttactgtaacattattgagtttacaaaatcacgac 31908790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 319 - 449
Target Start/End: Original strand, 23732005 - 23732137
Alignment:
Q  319 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatag--ccattagatcaaattgtgtggctcagattaaaagttccata 416  Q
    |||||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  23732005 gcatgtatcaagtgaggggagtgtcttatgatgagagatgggaggactcattaatagagccattagatcaaattgtgtggctcagattaaaagttccata 23732104  T
Q  417 tttaattaattacacatgatttattttcttctt 449  Q
    || ||||||||||| ||||||||||||||||||    
T  23732105 ttcaattaattacaaatgatttattttcttctt 23732137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 321 - 438
Target Start/End: Original strand, 17172741 - 17172857
Alignment:
Q  321 atgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatattta 420  Q
    |||||||| ||||||| ||| ||| || ||||||| ||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||| |  |    
T  17172741 atgtatcaggtgagagaagtatct-attgtgagaggtgagaggactcattaatagcctttagattaaattgtgtggctcagattaaaagctccatctaaa 17172839  T
Q  421 attaattacacatgattt 438  Q
    ||||||||||||||||||    
T  17172840 attaattacacatgattt 17172857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 324 - 437
Target Start/End: Complemental strand, 44769620 - 44769510
Alignment:
Q  324 tatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaatt 423  Q
    ||||||||||||||||| ||| || ||||||  ||||||||| ||||||||||||||||||||||||||| || ||||||| |||| |||||||| ||||    
T  44769620 tatcaagtgagaggagtatct-attgtgaga--tgagaggacccattaatagccattagatcaaattgtgcgggtcagatttaaagctccatattaaatt 44769524  T
Q  424 aattacacatgatt 437  Q
    ||||||||||||||    
T  44769523 aattacacatgatt 44769510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 326 - 449
Target Start/End: Original strand, 1631717 - 1631839
Alignment:
Q  326 tcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaa 425  Q
    ||||||||||||||| ||| || ||||||||||||| |||||||||||| ||||||||| ||||| |||| ||||||||||||| ||| |||| ||||||    
T  1631717 tcaagtgagaggagtatct-attgtgagagatgagatgactcattaataaccattagattaaattatgtgactcagattaaaagctccttattaaattaa 1631815  T
Q  426 ttacacatgatttattttcttctt 449  Q
     ||||||| |||| ||| ||||||    
T  1631816 ctacacataatttttttccttctt 1631839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 349 - 437
Target Start/End: Complemental strand, 1632799 - 1632712
Alignment:
Q  349 gtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 437  Q
    ||||||||| ||||||||||||||| ||||||| || ||||| ||||||||| |||||||| | |||||| |||||| |||||||||||    
T  1632799 gtgagagataagaggactcattaatggccattaaattaaattatgtggctcaaattaaaagcttcatattaaattaa-tacacatgatt 1632712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 321 - 362
Target Start/End: Original strand, 36390452 - 36390493
Alignment:
Q  321 atgtatcaagtgagaggagtgtcttatggtgagagatgagag 362  Q
    |||||||||||||||||||||||||||   ||||||||||||    
T  36390452 atgtatcaagtgagaggagtgtcttattacgagagatgagag 36390493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 36681532 - 36681596
Alignment:
Q  324 tatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaat 389  Q
    ||||||||||||||||| | |||| |||||||||||||||| | ||||||| ||||| ||| ||||    
T  36681532 tatcaagtgagaggagt-tgttatagtgagagatgagaggagtaattaataaccattcgattaaat 36681596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 127; Significance: 2e-65; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 319 - 449
Target Start/End: Complemental strand, 30270262 - 30270132
Alignment:
Q  319 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatt 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  30270262 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcaaattaaaagttccatatt 30270163  T
Q  419 taattaattacacatgatttattttcttctt 449  Q
    |||||||||||||||||||||||||||||||    
T  30270162 taattaattacacatgatttattttcttctt 30270132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 22 - 173
Target Start/End: Complemental strand, 18013962 - 18013810
Alignment:
Q  22 aaagttgtgtaattttatattatttgtacattatttcgtaatattatgaaatggattgttctgttttgcaagttaatgtgcatcagtcacaatagaacct 121  Q
    |||||||||||||||||||||| ||  ||||||||| || |||||||||| ||||||||| |||||| ||| ||| | ||||||||||||||||||||||    
T  18013962 aaagttgtgtaattttatattactttaacattattttgtgatattatgaagtggattgttatgttttacaaattactctgcatcagtcacaatagaacct 18013863  T
Q  122 ctatatcttgagat-agtaactccttttttagtgaaaccaattttgtttgaaa 173  Q
     |||||| |||| | || ||||||||||| | ||| |||||||  ||||||||    
T  18013862 ttatatcatgagctaagaaactcctttttgaatgataccaattgagtttgaaa 18013810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 324 - 381
Target Start/End: Complemental strand, 24890605 - 24890548
Alignment:
Q  324 tatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccatta 381  Q
    |||||||||||||||||||||||| |||||||||||||||| | ||||||| ||||||    
T  24890605 tatcaagtgagaggagtgtcttattgtgagagatgagaggattgattaataaccatta 24890548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 41770523 - 41770470
Alignment:
Q  356 atgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaag 409  Q
    ||||||||||||||||||| |||| |||||||||||| ||| ||||||||||||    
T  41770523 atgagaggactcattaataaccatcagatcaaattgtatggatcagattaaaag 41770470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 356 - 391
Target Start/End: Complemental strand, 34238749 - 34238714
Alignment:
Q  356 atgagaggactcattaatagccattagatcaaattg 391  Q
    ||||||||||||||||||||||||||||||||||||    
T  34238749 atgagaggactcattaatagccattagatcaaattg 34238714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 324 - 374
Target Start/End: Original strand, 24889910 - 24889960
Alignment:
Q  324 tatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaata 374  Q
    |||||||||||||||||||| ||||||||||||||||| || | |||||||    
T  24889910 tatcaagtgagaggagtgtcgtatggtgagagatgagaagattgattaata 24889960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 355 - 409
Target Start/End: Original strand, 41768834 - 41768888
Alignment:
Q  355 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaag 409  Q
    |||||||| |||| |||||| ||||||||||||||||| ||| || |||||||||    
T  41768834 gatgagagaactcgttaataaccattagatcaaattgtatggatcggattaaaag 41768888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 2e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 319 - 446
Target Start/End: Complemental strand, 17873596 - 17873469
Alignment:
Q  319 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatt 418  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||||||||| | ||||||||||| |||||||    
T  17873596 gcatgtatcaaatgagaggagtatcttatggtgagagatgagaggactaatcaatagccattagatcaaattgtgtgggttagattaaaagtgccatatt 17873497  T
Q  419 taattaattacacatgatttattttctt 446  Q
     ||||||| |||||||||||||||||||    
T  17873496 aaattaatcacacatgatttattttctt 17873469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 319 - 405
Target Start/End: Complemental strand, 44474000 - 44473914
Alignment:
Q  319 gcatgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagatta 405  Q
    |||||||||||||||||||| | ||||||||||||||||||| |||||||| |||||||||| ||||||||||||||| | ||||||    
T  44474000 gcatgtatcaagtgagaggaatatcttatggtgagagatgagcggactcatcaatagccattggatcaaattgtgtgggttagatta 44473914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 355 - 409
Target Start/End: Complemental strand, 42294304 - 42294250
Alignment:
Q  355 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaag 409  Q
    |||||||||| |||||||||||||||||||||||||| | |  ||||||||||||    
T  42294304 gatgagaggattcattaatagccattagatcaaattgagcgaatcagattaaaag 42294250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 322 - 437
Target Start/End: Complemental strand, 23638301 - 23638186
Alignment:
Q  322 tgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaa 421  Q
    ||||||||||||||||||| |||||| ||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |  ||    
T  23638301 tgtatcaagtgagaggagtatcttattgtgagaggtgagaggactcattaatagacattagattaaattgtgtggctcagattaaaagttccatctaaaa 23638202  T
Q  422 ttaattacacatgatt 437  Q
    ||||||||||| ||||    
T  23638201 ttaattacacaagatt 23638186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 322 - 437
Target Start/End: Complemental strand, 36001940 - 36001825
Alignment:
Q  322 tgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaa 421  Q
    ||||||||||||||| ||| |||||| ||||||| |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| |  ||    
T  36001940 tgtatcaagtgagagaagtatcttattgtgagaggtgagaggactcattaatagccattagattaaattatgtggctcagattaaaagttccatctaaaa 36001841  T
Q  422 ttaattacacatgatt 437  Q
    ||||||||||| ||||    
T  36001840 ttaattacacaagatt 36001825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 349 - 438
Target Start/End: Original strand, 36001028 - 36001117
Alignment:
Q  349 gtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgattt 438  Q
    ||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||| || |||||||||||||||||||    
T  36001028 gtgagaggtgagaggactctttaatagccattaaattaaattgtgtggctcagattaaaagctccattttaaattaattacacatgattt 36001117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 326 - 438
Target Start/End: Original strand, 23637385 - 23637496
Alignment:
Q  326 tcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaa 425  Q
    |||| |||||||||| ||| || ||||||| ||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||| || ||||||    
T  23637385 tcaaatgagaggagtatct-attgtgagaggtgagaggactctttaatagccattaaattaaattgtgtggctcagattaaaagctccatcttaaattaa 23637483  T
Q  426 ttacacatgattt 438  Q
    |||||||| ||||    
T  23637484 ttacacataattt 23637496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 39832038 - 39831956
Alignment:
Q  355 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 437  Q
    |||||||||||||||||||| ||||||||||||||||| ||| |||||||||||  | |||||  |||||||| |||||||||    
T  39832038 gatgagaggactcattaataaccattagatcaaattgtatggatcagattaaaaacttcatataaaattaattgcacatgatt 39831956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 356 - 427
Target Start/End: Original strand, 46144752 - 46144823
Alignment:
Q  356 atgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaatt 427  Q
    ||||||||||||||||||| | ||||||||||||||| ||| |||||||||||| | |||||  ||||||||    
T  46144752 atgagaggactcattaataactattagatcaaattgtatggatcagattaaaagcttcatataaaattaatt 46144823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 20422975 - 20423056
Alignment:
Q  356 atgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 437  Q
    |||||||||||||||||||||||||| |||||||||   || |||||||||||| | |||||  |||| ||| |||||||||    
T  20422975 atgagaggactcattaatagccattaaatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 20423056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 321 - 438
Target Start/End: Original strand, 4908330 - 4908446
Alignment:
Q  321 atgtatcaagtgagaggagtgtcttatggtgagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatattta 420  Q
    |||||||| ||||||||||| ||| || ||||||| ||||||||||| ||||||||| |||||| |||||||||||||||||||||||| ||||| |  |    
T  4908330 atgtatcaggtgagaggagtatct-attgtgagaggtgagaggactcgttaatagcctttagattaaattgtgtggctcagattaaaagctccatctaaa 4908428  T
Q  421 attaattacacatgattt 438  Q
    ||||||||||||||||||    
T  4908429 attaattacacatgattt 4908446  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 10470096 - 10470178
Alignment:
Q  355 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 437  Q
    |||||||||||||||||||||||||||||| ||||||   || |||||||||||| | |||||  |||| ||| |||||||||    
T  10470096 gatgagaggactcattaatagccattagattaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 10470178  T

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Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 43511068 - 43511150
Alignment:
Q  355 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 437  Q
    |||||||||||||||||||||||||||||||||||||   || || ||||||||| | |||||  |||| ||| |||||||||    
T  43511068 gatgagaggactcattaatagccattagatcaaattgaacggatctgattaaaagcttcatataaaattgattgcacatgatt 43511150  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 25593368 - 25593409
Alignment:
Q  322 tgtatcaagtgagaggagtgtcttatggtgagagatgagagga 364  Q
    ||||||||||||||||||| | |||||||||||||||||||||    
T  25593368 tgtatcaagtgagaggagtat-ttatggtgagagatgagagga 25593409  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 324 - 364
Target Start/End: Original strand, 4084001 - 4084040
Alignment:
Q  324 tatcaagtgagaggagtgtcttatggtgagagatgagagga 364  Q
    ||||||||||||||||| | |||||||||||||||||||||    
T  4084001 tatcaagtgagaggagtct-ttatggtgagagatgagagga 4084040  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 351 - 437
Target Start/End: Complemental strand, 17891 - 17805
Alignment:
Q  351 gagagatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 437  Q
    ||||||||||||||||||||| ||||| ||||||||||||||  || |||||||||||| || ||||  ||||||||||||||||||    
T  17891 gagagatgagaggactcattagtagcctttagatcaaattgtacggatcagattaaaagctcgatataaaattaattacacatgatt 17805  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 354 - 437
Target Start/End: Complemental strand, 5578876 - 5578792
Alignment:
Q  354 agatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccat-atttaattaattacacatgatt 437  Q
    |||||||| ||||||||||||| |||||||| ||||| |||||||||||||||||| ||||| ||  | ||||||||||||||||    
T  5578876 agatgagaagactcattaatagacattagattaaattatgtggctcagattaaaagctccatgataaatttaattacacatgatt 5578792  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 53833283 - 53833242
Alignment:
Q  349 gtgagagatgagaggactcattaatagccattagatcaaatt 390  Q
    ||||||||||||||||||||||||||||||||| || |||||    
T  53833283 gtgagagatgagaggactcattaatagccattaaattaaatt 53833242  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 45432975 - 45432893
Alignment:
Q  355 gatgagaggactcattaatagccattagatcaaattgtgtggctcagattaaaagttccatatttaattaattacacatgatt 437  Q
    |||||||||||||||||||||| ||||||||||||||  ||| |||||||||||| | |||||  |||| ||| |||||||||    
T  45432975 gatgagaggactcattaatagctattagatcaaattgaatggatcagattaaaagcttcatataaaattgattgcacatgatt 45432893  T

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Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 8452 - 8415
Alignment:
Q  355 gatgagaggactcattaatagccattagatcaaattgt 392  Q
    |||||||||||||||||||| |||||||||||||||||    
T  8452 gatgagaggactcattaataaccattagatcaaattgt 8415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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