View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_10 (Length: 481)
Name: NF15351_low_10
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 120 - 463
Target Start/End: Complemental strand, 24076398 - 24076057
Alignment:
| Q |
120 |
agctagtaaaagttcacgactcatcatacatacgatgaaagtcaagagaaagctagttggaatggaaaatttgaagcataaagaagacccttaatgtgca |
219 |
Q |
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| T |
24076398 |
agctagtaaaagttcacgactcatcatacaaatgatgaaagtt--gagaaagctagttggaatggaaaatttgaagcataaagaagacccttaatgtgca |
24076301 |
T |
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| Q |
220 |
gacaaatagttaattaacggtgaccaccttagacaaagtatttatatcctctgcacaatgcatcaactgcaaccagcaaaatagttgatctacatttaag |
319 |
Q |
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| T |
24076300 |
gacaaatagttaattaatggtgaccaccttagacaaagtatttatatcctctgcacaatgcatcaactgcaaccagcaaaatagttgatctacgtttaag |
24076201 |
T |
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| Q |
320 |
tttctccatctataccattttaaatctaatggtcctaactcctacgcagctataatgaag-ctacacattgatttcttctgtttcttttctgatatgcta |
418 |
Q |
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| T |
24076200 |
tttctcc-tctataccattttaaatctaatggtcctaactcctacgcagctataatgaagtctacacattgatttcttctgtttcttttctgatacgcta |
24076102 |
T |
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| Q |
419 |
taatttcatgtcccccttacgaatttatatagatgtagaggtaac |
463 |
Q |
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| T |
24076101 |
taatttcgtgttccccttacgaatttatatagatgtagaggtaac |
24076057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 3 - 116
Target Start/End: Complemental strand, 24076607 - 24076494
Alignment:
| Q |
3 |
aagatatacattgtcggagtatcaaatcatttgcaaaatatatggctaagcttatgtctttgaatcaacgatagaaaacaaatcagcatttgatttcatc |
102 |
Q |
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| T |
24076607 |
aagatatacattgttggagtatcaaataatttgtgaaatatatgtctaagcttatgtctttgaatcaacgatagaaaacaaatcagcatttgatttcatc |
24076508 |
T |
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| Q |
103 |
tatgttatgatagg |
116 |
Q |
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| T |
24076507 |
tatgttatgatagg |
24076494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 16441159 - 16441254
Alignment:
| Q |
2 |
gaagatatacattgtcggagtatcaaatcatttgcaaaatatatggctaagcttatgtctttgaatcaacgatagaaaacaaatcagcatttgatt |
97 |
Q |
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|||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16441159 |
gaagatatacattgtcggagtatcaaataatatgtgaaatatatggctaagcttatgtctttgaatcaacgatagaaaacaaatcagcatttgatt |
16441254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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