View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15351_low_11 (Length: 477)

Name: NF15351_low_11
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15351_low_11
NF15351_low_11
[»] chr4 (3 HSPs)
chr4 (31-460)||(5822219-5822648)
chr4 (333-460)||(5829241-5829368)
chr4 (334-459)||(5831980-5832105)


Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 31 - 460
Target Start/End: Original strand, 5822219 - 5822648
Alignment:
Q  31 aagtgacaaataattacattattcaaacgaattctaatgaaaagaatgtaacttaaatatacctataattaaataaaacattattatttatacaaagttg 130  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||  |||||||||||||||||||||||||||||||||||||    
T  5822219 aagtaacaaataattacattattcaaacgaattctaatgaaaagaatg-agcttaaatataaatataattaaataaaacattattatttatacaaagttg 5822317  T
Q  131 atgcttatttcttatagaaaa-gtctttttacggattaagttgttttacgatatgaagtccagttgaaatctccacctttcaatcatttctcaaggactt 229  Q
    ||||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||||||| |||||||||||||| |||| |||||||||||||||||    
T  5822318 atgcttatttcttatagaaaaagtctttttatggattaagttgttttactatatgaagtccatttgaaatctccaccattcattcatttctcaaggactt 5822417  T
Q  230 tgaccacatatgctagagactgatgggagagtgttatttaaccccttgcagaagatacgtttcagtgataactcattttcctttgaaatctcagaaatag 329  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5822418 tgaccacatatgctagagactgatgggagagtgttatttaaccccttgcagaagatacgtttcagtgataactcattttcctttgaaatctcagaaatag 5822517  T
Q  330 gtgtaggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||    
T  5822518 gtgtaggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacg 5822617  T
Q  430 agggttgttcttgtgtttctcacaaagttcc 460  Q
    |||||||||||||||||||||||||||||||    
T  5822618 agggttgttcttgtgtttctcacaaagttcc 5822648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 333 - 460
Target Start/End: Complemental strand, 5829368 - 5829241
Alignment:
Q  333 taggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgagg 432  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||    
T  5829368 taggtgcagctgcaggtgctaacgcaatatcctgtgaaatcgatgaagcaggaccaagtgcagctcctgagctagtaagttcaattgtagcacgacgagg 5829269  T
Q  433 gttgttcttgtgtttctcacaaagttcc 460  Q
    |||| |||||||||||||||||||||||    
T  5829268 gttggtcttgtgtttctcacaaagttcc 5829241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 334 - 459
Target Start/End: Original strand, 5831980 - 5832105
Alignment:
Q  334 aggtgcagatgctggtgctaacgcaatatcctgtgaaatcgatgaagcagggccaagtgcagctcctgagctagtaagttcgattgtagcacgacgaggg 433  Q
    |||||||| ||| ||||||||| |||| |||| |||||  || ||||| ||||||| ||||||||| |||||   ||| ||||   ||||||||||||||    
T  5831980 aggtgcagctgcaggtgctaacacaatgtcctctgaaactgaagaagccgggccaaatgcagctccggagctcacaagctcgaccatagcacgacgaggg 5832079  T
Q  434 ttgttcttgtgtttctcacaaagttc 459  Q
    ||| |||||||||||||||| |||||    
T  5832080 ttggtcttgtgtttctcacatagttc 5832105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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