View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_15 (Length: 443)
Name: NF15351_low_15
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 11 - 426
Target Start/End: Complemental strand, 14393515 - 14393101
Alignment:
| Q |
11 |
cataggagtttgatttttatattagagggtttggcttcatatctttattttgagcgatgtgggacttaagtccaacactattatctcttcaatgatccac |
110 |
Q |
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| T |
14393515 |
cataggagtttgatttttatattagagggtttggcttcatatctttattttgaccgatgtgggacttaagtccaacactattatctcttcaatgatccac |
14393416 |
T |
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| Q |
111 |
atgcttttgttccttgatatatgttaatacacaattgatatcgtaaatgaagaacatcaacatcaagactaagaaaatagttaaacatacagaattgtaa |
210 |
Q |
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| T |
14393415 |
atacttttgttccttgatatatgttaatacacaattgatatcgtaaatgaagaacatcaacatcaagactaagaaaatagttaaacatacagaattgtaa |
14393316 |
T |
|
| Q |
211 |
ttacagtgaattgtcgaaatataccttcagcttcacttccaaaatctgggggaacatgttttgccgatggtttcaagcttagcaaaaatcattcagaaaa |
310 |
Q |
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| T |
14393315 |
ttacaatgaattgtcgaaatataccttcagcttcacttccaaaatctgggggaacatgttttgccgatggtttcaagcttagcaaaaatcattcagaaaa |
14393216 |
T |
|
| Q |
311 |
tggcaatgacattccatctcctccaacaggggcattagccattcatttagcttcaccttcactttcagccttactatcacgttctccatccctatgcttt |
410 |
Q |
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| T |
14393215 |
tggcaatgacattccatctccttcaacaggggcattagcca-tcatttagcttcaccttcactttcagccttactatcacgttctccatccctatgcttt |
14393117 |
T |
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| Q |
411 |
tctcgagaacactcct |
426 |
Q |
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| T |
14393116 |
tctcgagaacactcct |
14393101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 14396391 - 14396293
Alignment:
| Q |
14 |
aggagtttgatttttatattagagggtttg-gcttcatatctttattttgagcgatgtgggacttaagtccaacactattatctcttcaatgatccaca |
111 |
Q |
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| T |
14396391 |
aggagtttgatttttatattagagggttttagcttcatgtctttattttgagcgatgtggggcataagtctaacactattatctcttcaatgatccaca |
14396293 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 256 - 426
Target Start/End: Original strand, 16024420 - 16024593
Alignment:
| Q |
256 |
ctgggggaacatgttttgccgatggtttcaagcttagcaaaaatcattcagaaaatggcaatgacattccatctcctccaacag---gggcattagccat |
352 |
Q |
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| T |
16024420 |
ctgggggaacatgctttgccaatggcttcacatttagaagaaagcgttcagaaaatggtaatgatgttccatctccttcaacatcatgtgcatcagccat |
16024519 |
T |
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| Q |
353 |
tcatttagcttcaccttcactttcagccttactatcacgttctccatccctatgcttttctcgagaacactcct |
426 |
Q |
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| T |
16024520 |
tccttcagcttcaccttcactttcagccttatcatcatgttctccatcatcatgctcttcttgagagcactcct |
16024593 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 423
Target Start/End: Complemental strand, 14391429 - 14391316
Alignment:
| Q |
303 |
tcagaaaatggcaatgacattccatctcctccaacaggggcattagccattcatttagcttcaccttcactttcagccttactatcacgttctccatccc |
402 |
Q |
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||||||||||||||||||||||||||| || ||||| |||||| ||| |||| || | ||||||| |||||||||| ||||| |||||||||| | |
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| T |
14391429 |
tcagaaaatggcaatgacattccatcttcttcaacatgggcatcagctattccttcaacttcacc------ttcagccttattatcatgttctccatcgc |
14391336 |
T |
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| Q |
403 |
tatgcttttctcgagaacact |
423 |
Q |
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|||| |||||||||||||| |
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| T |
14391335 |
-gtgctcttctcgagaacact |
14391316 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 305 - 401
Target Start/End: Original strand, 13882008 - 13882108
Alignment:
| Q |
305 |
agaaaatggcaatgacattccatctcctccaac---aggggcattagccatt--catttagcttcaccttcactttcagccttactatcacgttctccat |
399 |
Q |
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|||||||||||||||| ||||||||||| |||| | | |||||| ||||| ||| ||||||||||||||||||||||||| ||||| ||||| ||| |
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| T |
13882008 |
agaaaatggcaatgacgttccatctccttcaacttcatgcgcattatccattttcatc-agcttcaccttcactttcagccttattatcatgttctgcat |
13882106 |
T |
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| Q |
400 |
cc |
401 |
Q |
| |
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|| |
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| T |
13882107 |
cc |
13882108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 314 - 426
Target Start/End: Complemental strand, 14397711 - 14397599
Alignment:
| Q |
314 |
caatgacattccatctcctccaacaggggcattagccattcatttagcttcaccttcactttcagccttactatcacgttctccatccctatgcttttct |
413 |
Q |
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|||| ||||| |||||||| ||||| ||||| |||||||| || ||| |||||||||| || ||||||| ||||| ||||||||| ||| |||| |
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| T |
14397711 |
caattacatttcatctccttcaacaccggcatcagccattccttcagcctcaccttcaccttgagccttattatcatattctccatcgtcgcgctcttct |
14397612 |
T |
|
| Q |
414 |
cgagaacactcct |
426 |
Q |
| |
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||||||||||||| |
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| T |
14397611 |
cgagaacactcct |
14397599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 172 - 215
Target Start/End: Original strand, 14358302 - 14358345
Alignment:
| Q |
172 |
atcaagactaagaaaatagttaaacatacagaattgtaattaca |
215 |
Q |
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||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
14358302 |
atcaagactaaagaaatatttaaacatacagaattgtaattaca |
14358345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 14390406 - 14390339
Alignment:
| Q |
14 |
aggagtttgatttttatattagagggtttggcttcatatctttattttgagcgatgtgggacttaagt |
81 |
Q |
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||||||| ||||||||||||||||| |||||| ||| |||| | ||| |||||||||||| |||||| |
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| T |
14390406 |
aggagttcgatttttatattagaggttttggcctcacgtcttgactttcagcgatgtgggatttaagt |
14390339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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