View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_16 (Length: 439)
Name: NF15351_low_16
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 80 - 423
Target Start/End: Original strand, 46497471 - 46497811
Alignment:
| Q |
80 |
gtaagaatggaaccaatgtctcaatgaaacttaatatccaatccaaaccaattgaattagtttgatannnnnnnnnnnatgttcgaatatcaaccaaacc |
179 |
Q |
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| T |
46497471 |
gtaagaatcgaaccaatgtctcaatgaaacttaatatccaatacaaaccaattgaattagtttgatatttttttt---atgttcgaatatcaaccaaacc |
46497567 |
T |
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| Q |
180 |
aaataaatcaaattcgacctctattaattccaatattaatttcacataattcaaaactgatcattgatacacgaaccaaatcattatatttataatttac |
279 |
Q |
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| T |
46497568 |
aaataaatcaaattcgacctctattaattccaatattaatttcacataattcaaaactgatcattgatacatgaaccaaatcattatatttataatttac |
46497667 |
T |
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| Q |
280 |
gatcagcaaactgaatannnnnnnaagcaaataaataatctagtctagtaatacatatgaaaagaatatcatgagtt-aaaaatgggaaatgcatgccat |
378 |
Q |
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| T |
46497668 |
gatcagcaaactgaatatatttttaagcaaat-aataatctagtctagtaatacatatgaaaagaatatcatgagttaaaaaatgggaaatgcatgccat |
46497766 |
T |
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| Q |
379 |
gagcactaagcaggagcgattaggacaatgtcagaaggtaagaat |
423 |
Q |
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| T |
46497767 |
gagcactaagcaggagcgattaggacaatgtcagaaggtaagaat |
46497811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 14 - 81
Target Start/End: Original strand, 46497309 - 46497376
Alignment:
| Q |
14 |
agagccattcaaatcacatatcgaatgaacatatgtctataactgagtctaatctttatcttacaagt |
81 |
Q |
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| T |
46497309 |
agagccattcaaatcacatattgaatgaacatatgtctatatctgagtccaatctttatcttaaaagt |
46497376 |
T |
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