View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_18 (Length: 415)
Name: NF15351_low_18
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 16 - 400
Target Start/End: Complemental strand, 13792838 - 13792454
Alignment:
| Q |
16 |
atgaatcacacgctaagaaagaagaagattctcgaactttcaaacgatataaacaaaagcgcggagaagtttgaagcagttaatattggaagacttgctt |
115 |
Q |
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| T |
13792838 |
atgaatcacacgctaagaaagaagaagattctcgaactttcaaacgatataaacaatagcgcggagaagtttgaagtagttaatattggaagacttgctt |
13792739 |
T |
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| Q |
116 |
ttaaaacaacaattaatatgttgtcgaatacggtttattcagttgatttggttcgttcgagtgatatagctggagagtttaaggaattagttacaaatat |
215 |
Q |
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| T |
13792738 |
ttaaaacaacgattaatatgttgtcgaatacggtttattcagttgatttggttcgttcgagcgatatagctggagagtttaaggaattagttacaaatat |
13792639 |
T |
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| Q |
216 |
tatgaaggaagttggaagagctaatattgcagattgttttcctgttttgaaagttatggatccaattggtattagaagaaggactggtgaatattttggg |
315 |
Q |
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| T |
13792638 |
tatgaaggaagttggaagagctaatattgcagattgttttcctgttttgaaagttttggatccaattggtattagaagaaggactggtgaatattttggg |
13792539 |
T |
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| Q |
316 |
aagttgttaggtatttttcaagggttggttgatcaacggttgaagatgagggagttgaatggttattgtggtaaaagtgatatgt |
400 |
Q |
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| T |
13792538 |
aagttgttaggtatttttcaagggttggttgatcaacggttgaagatgagggagttgaatggttattgtggtaaaagtgatatgt |
13792454 |
T |
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