View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15351_low_2 (Length: 877)
Name: NF15351_low_2
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_2 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 799; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 799; E-Value: 0
Query Start/End: Original strand, 15 - 861
Target Start/End: Original strand, 30126899 - 30127745
Alignment:
| Q |
15 |
tattctcaaagatgctagggatattaagaaaattgggttggatttcatgcctatgagttgtctctctattgatatttcaaataatagggaaaatgttcca |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30126899 |
tattctcaaagatgctagggatattaagaaaattgagttggatttcatgcctatgagttgtctctctattgatatttcaaataatagggaaaatgttcca |
30126998 |
T |
|
| Q |
115 |
gttaggctatttaatgatatagatgtcaatcaagaacctctttattatgtgtatcttccgaatactactttcccgtggtttgtgtttcatcagagtgggg |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
30126999 |
attaggctatttaatgatatagatgtcaatcaagaacctctttattatatgtatcttccgaatactactttcccgtggtttgtatttcatcagagtgggg |
30127098 |
T |
|
| Q |
215 |
aagctaatggttttggatgtaaggaggcttgcactgacggttgcttttgcgctatgaagaatggaggagagtttccctataatctacatggattgcttgt |
314 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30127099 |
aagctaatggttgtggatgtaaggaggcttgcactgacggttgcttttgcgctatgaagaatggaggagagtttccctataatctacatggattgcttgt |
30127198 |
T |
|
| Q |
315 |
gaaagggaaacctttgatttttgaatgcggccccttttgctcatgtcctcctaattgtcgaaaccgtgttgcacaaaaggggctcaaatatagcttggaa |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30127199 |
gaaagggaaacctttgatttttgaatgcggccctttttgctcatgtcctcctaattgtcgaaaccgtgttgcacaaaaggggctcaaatatagcttggaa |
30127298 |
T |
|
| Q |
415 |
gtgtttaggtctacacagacaggttggggagttaggtccttggaccttattcaggttggatcatttatctgcgagtatactggtgttgctatgactaggg |
514 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |
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|
| T |
30127299 |
gtgtttaggtctacacagacaggttggggagttagatccttggaccttattcaggctggatcatttatctgcgagtatactggtgttgctatgactagtg |
30127398 |
T |
|
| Q |
515 |
aacaagctcaaactttaacaatgaatgaggactcgttggtatatcctagtagatttgcaaatagatgggtagaatggggtgatttatctcaaatatacac |
614 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30127399 |
aacaagctcaaactttaacaatgaatgaggactcgttggtatatcctagtagatttgcaaatagatgggtagaatggggtgatttatctcagatatacac |
30127498 |
T |
|
| Q |
615 |
taaatatgtgcgaccatcttatccaccaatacctcctttagattattttcttgatgtgtcaacaatgagaaatgttgcatcctatatgagccatagttcg |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30127499 |
taaatatgtgcgaccatcttatccaccaatacctcctttagattattttcttgatgtgtcaacaatgagaaatgttgcatcctatatgagccatagttcg |
30127598 |
T |
|
| Q |
715 |
agtccaaatatattcattcagtatgttctctatgatcacaacaatttgttgttccctcatgtcatgttatatgcaatggagaacatccctcctatgagag |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30127599 |
agtccaaatatattcattcagtatgttctctatgatcacaacaatttgttgttccctcatgtcatgttatatgcaatggagaacatccctcctatgagag |
30127698 |
T |
|
| Q |
815 |
aactctgcatagattatggcatcccagacgagtgggcgagcaagatg |
861 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||| ||||||| |
|
|
| T |
30127699 |
aactctgcatagattatggcatctcagacgagtgggcgaacaagatg |
30127745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 17 - 849
Target Start/End: Complemental strand, 29750544 - 29749712
Alignment:
| Q |
17 |
ttctcaaagatgctagggatattaagaaaattgggttggatttcatgcctatgagttgtctctctattgatatttcaaataatagggaaaatgttccagt |
116 |
Q |
| |
|
|||||||||| |||||||| ||||||||||||||||||||| | | ||||||| |||||| ||| ||||||||||| | || ||||| |||||||| | |
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|
| T |
29750544 |
ttctcaaagaggctagggagattaagaaaattgggttggatgttaagcctatgtattgtctttctgttgatatttcacacaagagggagaatgttcctat |
29750445 |
T |
|
| Q |
117 |
taggctatttaatgatatagatgtcaatcaagaacctctttattatgtgtatcttccgaatactactttcccgtggtttgtgtttcatcagagtggggaa |
216 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||| ||| |||||||||||||||||||||| | |
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|
| T |
29750444 |
taggctatttaatgatatagatgacaatcaagaacctctttattatgagtatcttccgaaaactacttttccgcagtttgtgtttcatcagagtgggaat |
29750345 |
T |
|
| Q |
217 |
gctaatggttttggatgtaaggaggcttgcactgacggttgcttttgcgctatgaagaatggaggagagtttccctataatctacatggattgcttgtga |
316 |
Q |
| |
|
|||| ||| | || |||| ||||||||| ||||| || ||||||||| |||||||||||||||||||||||||||||||||| || || |||||||||| |
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|
| T |
29750344 |
gctactggctgtgaatgtgtggaggcttgtactgatggctgcttttgctctatgaagaatggaggagagtttccctataatcttcagggtttgcttgtga |
29750245 |
T |
|
| Q |
317 |
aagggaaacctttgatttttgaatgcggccccttttgctcatgtcctcctaattgtcgaaaccgtgttgcacaaaaggggctcaaatatagcttggaagt |
416 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||| || |||||||||||||||||| ||| |||| |||||||| |
|
|
| T |
29750244 |
gagggaggcctttgatttttgaatgtggccctttttgctcctgtcctcccaattgtcggaatcgtgttgcacaaaaggggatcaggcataggttggaagt |
29750145 |
T |
|
| Q |
417 |
gtttaggtctacacagacaggttggggagttaggtccttggaccttattcaggttggatcatttatctgcgagtatactggtgttgctatgactagggaa |
516 |
Q |
| |
|
|||||||||| | ||||| ||||||||||||||||| |||||||||||||| | ||| | ||||||||||||||||| || || | | || ||||| |
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|
| T |
29750144 |
gtttaggtctgcgcagactggttggggagttaggtctttggaccttattcaagccggagcctttatctgcgagtatacaggggtaattttaacaagggag |
29750045 |
T |
|
| Q |
517 |
caagctcaaactttaacaatgaatgaggactcgttggtatatcctagtagatttgcaaatagatgggtagaatggggtgatttatctcaaatatacacta |
616 |
Q |
| |
|
|||||||||| |||||||||||||| |||||| || ||||||||| | | ||| || ||||||||| ||||||||| ||||| ||||| ||||||||| |
|
|
| T |
29750044 |
caagctcaaattttaacaatgaatggggactccttaatatatcctaatcggttttcagatagatgggcagaatggggggatttgtctcagatatacactg |
29749945 |
T |
|
| Q |
617 |
aatatgtgcgaccatcttatccaccaatacctcctttagattattttcttgatgtgtcaacaatgagaaatgttgcatcctatatgagccatagttcgag |
716 |
Q |
| |
|
| ||||||| ||||| ||||| |||| |||||||||||||||| ||| ||||| |||||||||||||||||||| | || ||||||||||||||||| |
|
|
| T |
29749944 |
atcatgtgcgtccatcgtatccctcaattcctcctttagattattctctggatgtatcaacaatgagaaatgttgcttgttacatgagccatagttcgag |
29749845 |
T |
|
| Q |
717 |
tccaaatatattcattcagtatgttctctatgatcacaacaatttgttgttccctcatgtcatgttatatgcaatggagaacatccctcctatgagagaa |
816 |
Q |
| |
|
||||||| | || ||||||||||||| ||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||| |||||||| |
|
|
| T |
29749844 |
tccaaatgtgtttgttcagtatgttctgtatgatcacaacaatttaatgttccctcatgttatgctatatgcaatggagaacatccctcctctgagagaa |
29749745 |
T |
|
| Q |
817 |
ctctgcatagattatggcatcccagacgagtgg |
849 |
Q |
| |
|
||| ||||||||||||||||| |||| |||||| |
|
|
| T |
29749744 |
ctcagcatagattatggcatcgcagatgagtgg |
29749712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 17 - 851
Target Start/End: Complemental strand, 29754132 - 29753298
Alignment:
| Q |
17 |
ttctcaaagatgctagggatattaagaaaattgggttggatttcatgcctatgagttgtctctctattgatatttcaaataatagggaaaatgttccagt |
116 |
Q |
| |
|
|||| ||||| |||||||| ||||||||||||||||| ||| | | ||||||| |||||| ||| ||||||||||||| || ||||| |||||||| || |
|
|
| T |
29754132 |
ttcttaaagaggctagggagattaagaaaattgggtttgatgttaagcctatgtattgtctttctgttgatatttcaaacaagagggagaatgttcctgt |
29754033 |
T |
|
| Q |
117 |
taggctatttaatgatatagatgtcaatcaagaacctctttattatgtgtatcttccgaatactactttcccgtggtttgtgtttcatcagagtggggaa |
216 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||||||||| |||| |||||||||||| |||||||| ||| ||||||||||||||| |||||| || |
|
|
| T |
29754032 |
taggctatttaatgacatagatgacaatcaaaaacctctttcgtatgagtatcttccgaaaactacttttccgcagtttgtgtttcatcaaagtgggaaa |
29753933 |
T |
|
| Q |
217 |
gctaatggttttggatgtaaggaggcttgcactgacggttgcttttgcgctatgaagaatggaggagagtttccctataatctacatggattgcttgtga |
316 |
Q |
| |
|
||| ||||| || |||| | |||||||| | ||| | ||||||||| ||||| ||||||||| |||||||| |||||||| || || ||||| |||| |
|
|
| T |
29753932 |
actactggttgtgaatgtcaagaggcttgtattgatgactgcttttgctttatgaggaatggaggtgagtttccttataatcttcagggcttgctcgtga |
29753833 |
T |
|
| Q |
317 |
aagggaaacctttgatttttgaatgcggccccttttgctcatgtcctcctaattgtcgaaaccgtgttgcacaaaaggggctcaaatatagcttggaagt |
416 |
Q |
| |
|
||||||| ||||||||||||||||| ||||| |||||||| |||||||| |||||||| || |||||||||||||||||| |||| ||| || ||||| |
|
|
| T |
29753832 |
aagggaagcctttgatttttgaatgtggccctttttgctcctgtcctcccaattgtcggaatcgtgttgcacaaaaggggatcaagcatatgtttgaagt |
29753733 |
T |
|
| Q |
417 |
gtttaggtctacacagacaggttggggagttaggtccttggaccttattcaggttggatcatttatctgcgagtatactggtgttgctatgactagggaa |
516 |
Q |
| |
|
|||||||||| | || || |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||| || || | | || |||||| |
|
|
| T |
29753732 |
gtttaggtctgcgcaaactggttggggagttaggtccttggaccttattcaggctggagcctttatctgcgagtataccggggtaattttaacaagggaa |
29753633 |
T |
|
| Q |
517 |
caagctcaaactttaacaatgaatgaggactcgttggtatatcctagtagatttgcaaatagatgggtagaatggggtgatttatctcaaatatacacta |
616 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||| ||||||| | || ||| ||||||||| | ||||||| ||||| ||||| ||||||| || |
|
|
| T |
29753632 |
caagctcaaattttaacaatgaatggtgactcgttaatatatccaaaaaggtttatggatagatgggcaaaatggggggatttgtctcagatatacaata |
29753533 |
T |
|
| Q |
617 |
aatatgtgcgaccatcttatccaccaatacctcctttagattattttcttgatgtgtcaacaatgagaaatgttgcatcctatatgagccatagttcgag |
716 |
Q |
| |
|
| ||||| || ||||| |||||| ||||||| | ||||||||| | | ||| | |||||| || ||||||| || |||| |||||||||||||||| |
|
|
| T |
29753532 |
attatgttcgtccatcatatccagtaatacctgatatagattattctatggatatatcaacattgcgaaatgtagctggctatttgagccatagttcgag |
29753433 |
T |
|
| Q |
717 |
tccaaatatattcattcagtatgttctctatgatcacaacaatttgttgttccctcatgtcatgttatatgcaatggagaacatccctcctatgagagaa |
816 |
Q |
| |
|
||||||| |||| |||||| ||||||||||||||| ||||| || ||||||| ||| ||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
29753432 |
tccaaatgtatttgttcagtttgttctctatgatcatgacaatctgatgttcccccatctcatgctatatgcaatggagaacatccctccattgagagaa |
29753333 |
T |
|
| Q |
817 |
ctctgcatagattatggcatcccagacgagtgggc |
851 |
Q |
| |
|
||| ||||||| ||||||||||| |||||||||| |
|
|
| T |
29753332 |
ctcagcatagactatggcatccctaacgagtgggc |
29753298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 358 - 515
Target Start/End: Original strand, 12859726 - 12859883
Alignment:
| Q |
358 |
tgtcctcctaattgtcgaaaccgtgttgcacaaaaggggctcaaatatagcttggaagtgtttaggtctacacagacaggttggggagttaggtccttgg |
457 |
Q |
| |
|
||||| ||| ||||||| ||||||||| ||||||| ||||| ||| |||| |||||||||||||| |||| |||| ||||||||||||||||| |||| |
|
|
| T |
12859726 |
tgtccgcctcattgtcggaaccgtgttacacaaaaagggcttaaacataggttggaagtgtttagatctagggagactggttggggagttaggtcattgg |
12859825 |
T |
|
| Q |
458 |
accttattcaggttggatcatttatctgcgagtatactggtgttgctatgactaggga |
515 |
Q |
| |
|
|||||||||| | ||| ||||||| |||||||| ||||| |||| | |||| ||||| |
|
|
| T |
12859826 |
accttattcaagctggtgcatttatatgcgagtacactggggttgttttgacaaggga |
12859883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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