View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15351_low_20 (Length: 409)
Name: NF15351_low_20
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_20 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 18 - 396
Target Start/End: Complemental strand, 43287328 - 43286951
Alignment:
| Q |
18 |
tctgctagcccatactgacatgaagattagaagtatagggaatccaagcaggctaaatatgtcagattaagttagtatcggtctcagcatttcagactta |
117 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43287328 |
tctgctagcccatactgacatgaagataagaagtatagggaatccaagcaggctaaatatgtcagattaagttagtatcggtctcagcatttcagactta |
43287229 |
T |
|
| Q |
118 |
aaaaaccctccaattactatacactctaaaatgacactaaatcatgcatataacagtaacattgaaaaatagttgaaacaccaaactacaatgattaaat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
43287228 |
aaaaaccctccaattactatacactctaaaatgacactaaatcatgcatataacagtaacattgaaaaatagttgaaacaccaa-ctagaatgattaaat |
43287130 |
T |
|
| Q |
218 |
taaatggacaaacaagaccataaagttttgattgcattgatagtgtgggtaggggactagtttggccaatgccttataggttcatgatctgtgtccttat |
317 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43287129 |
taaatggacaaataagaccataaagttttgattgcattgatagtgtgggtaggggactagtttggccaatgccttataggttcatgatctgtgtccttat |
43287030 |
T |
|
| Q |
318 |
ctcttatgtggatgtatcaatgtcaatttttgaagtttatgttataactatctaaccatgatttgacattgctcctttg |
396 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43287029 |
ctcgtatgtggatgtatcaatgtcaatttttgaagtttatgttataactatctaaccatgatttgacattgctcctttg |
43286951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University