View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_24 (Length: 370)
Name: NF15351_low_24
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 352
Target Start/End: Complemental strand, 38736761 - 38736420
Alignment:
| Q |
11 |
cacagaaccccgcacttagagtacatattaataagagctgttccaactgaagtattgctatccaatccccattcataagcatacctgtgaacttcatgac |
110 |
Q |
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| T |
38736761 |
cacagaaccccgcacttagagtacatattaataagagctgttccaactgaagtattgctatccaatccccattcataagcatacctgtgaacttcatgac |
38736662 |
T |
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| Q |
111 |
acttgttaatgtcacctaaaagcccaactgccttggatatacataaaaaggtggttttattaggcgacaccccattttcaatcatgttgatgagaaaatc |
210 |
Q |
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| T |
38736661 |
acctgttaatgtcacctaaaagcccaactgccttggatatacataaaaaggtggttttattaggcgacaccccattttcaatcatgttgatgagaaaatc |
38736562 |
T |
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| Q |
211 |
aaatgcttgtaagtataaaccatttgaggtaaacccagaaatcattgcattccaagaaacatcgtttacatctgtcatgttgttaaacacgttaacagaa |
310 |
Q |
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| T |
38736561 |
aaatgcttgtaagtataaaccatttgaggtaaacccagaaatcattgcattccaagaaacatcgtttacatctgtcatgttgttaaacacgttaacagaa |
38736462 |
T |
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| Q |
311 |
cactcacacattcctaacttcgcatacaagttaagaagagat |
352 |
Q |
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| T |
38736461 |
cactcacacattcctaacttcgcatacaagttaagaagagat |
38736420 |
T |
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