View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_26 (Length: 343)
Name: NF15351_low_26
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_26 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 24402294 - 24402633
Alignment:
| Q |
1 |
atacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcagctttgtgaatgatttccacgtagtgaaacttcctcta |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| |
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| T |
24402294 |
atacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcaactttgtgaatgatttccacatagtgaaacttcctcta |
24402393 |
T |
|
| Q |
101 |
ttacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaactcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402394 |
ttacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaactcag |
24402493 |
T |
|
| Q |
201 |
ttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactaggag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24402494 |
ttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactaggag |
24402593 |
T |
|
| Q |
301 |
atggattgttctaaggatttttagctttgcttgctttctt |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
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| T |
24402594 |
atggattgttctaaggatttttagctttgcttgctttctt |
24402633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 24415110 - 24415445
Alignment:
| Q |
1 |
atacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcagctttgtgaatgatttccacgtagtgaaacttcctcta |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||| |||| ||||| ||| || || |||||||||| |||||||| |||||||||||||||| |
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|
| T |
24415110 |
atacagtcaaccaatatatagtactgctgatagatggttcacaaaaaaataccccaacagtggctttgtgaacaatttccacaaagtgaaacttcctcta |
24415209 |
T |
|
| Q |
101 |
ttacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaactcag |
200 |
Q |
| |
|
|||||| |||||||||||||||||||||| || |||||| |||| || ||| ||||||||| ||||||||||||| ||||||||||||||||||||| |
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|
| T |
24415210 |
ttaccttcttttgagataaaccttttcagattctgttttagaacaagctatgtgatttcaaccactggatttgcaattttatttccttacttcaactcag |
24415309 |
T |
|
| Q |
201 |
ttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactaggag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | |
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|
| T |
24415310 |
ttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaa |
24415409 |
T |
|
| Q |
301 |
atggattgttctaaggatttttagctttgcttgctt |
336 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
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|
| T |
24415410 |
atggattgttctaaggatttttagctttgcttgctt |
24415445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 340
Target Start/End: Complemental strand, 24419415 - 24419076
Alignment:
| Q |
1 |
atacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcagctttgtgaatgatttccacgtagtgaaacttcctcta |
100 |
Q |
| |
|
|||| ||||||||||||||| |||||||| ||||||| ||| ||||| ||| || || |||||||||| ||||||||| |||||||||||||||| |
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|
| T |
24419415 |
atactgtcaaccaatatatactactgctgatagatggttctcaaaaaaataccctaacagtggctttgtgaacgatttccacaaagtgaaacttcctcta |
24419316 |
T |
|
| Q |
101 |
ttacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaactcag |
200 |
Q |
| |
|
||||| ||||| |||||||| |||||||| || |||| | |||| || ||| ||||||||| |||| | |||||| ||||||||||||||||||||| |
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|
| T |
24419315 |
ttaccagctttggagataaatcttttcagattctgttatagaacaagctatgtgatttcaaccactggactagcaattttatttccttacttcaactcag |
24419216 |
T |
|
| Q |
201 |
ttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactaggag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||| | |
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|
| T |
24419215 |
ttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaagaaagttggagcttggactagaaa |
24419116 |
T |
|
| Q |
301 |
atggattgttctaaggatttttagctttgcttgctttctt |
340 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
24419115 |
atggattgctctaaggatttttagctttgcttgctttctt |
24419076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 24380076 - 24380415
Alignment:
| Q |
1 |
atacagtcaaccaatatatagcactgctgacagatggtatacaagaaaattcccaaagagcagctttgtgaatgatttccacgtagtgaaacttcctcta |
100 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||| | |||||||||||||| |||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
24380076 |
atacagtcaaccaatatttaatactgctgatagatggtgttcaagaaaattcccagagagtggctttgtgaatgatttccacaaagtgaaacttcctcta |
24380175 |
T |
|
| Q |
101 |
ttacctgcttttgagataaaccttttcaggttttgttttcgaacggcctttgtaatttcaaccgttggatttgcaattctatttccttacttcaactcag |
200 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||| ||||| |||| || ||| ||||||||| |||| |||||||| | |||||||||||||| | |
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|
| T |
24380176 |
ttaccttcttttaagataaatcttttcaggttctgtttcagaacaagctatgtgatttcaaccactggacttgcaattttctttccttacttcaatcaaa |
24380275 |
T |
|
| Q |
201 |
ttctaggattattaggagccataaatttctggccattggctatatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactaggag |
300 |
Q |
| |
|
|||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |
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|
| T |
24380276 |
ttctaggagtactaggaggcataaatttctggccactggctatatatttcccagttgaaatgtactttgtacagaagaaaattggagcttggactaaaaa |
24380375 |
T |
|
| Q |
301 |
atggattgttctaaggatttttagctttgcttgctttctt |
340 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||||||||||| |
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|
| T |
24380376 |
atggattgttctcaggatatttagctttgcttgctttctt |
24380415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 42363075 - 42363172
Alignment:
| Q |
242 |
atatatttcccagttgaaatgtactttgtacagaataaaattggagcttggactaggagatggattgttctaaggatttttagctttgcttgctttct |
339 |
Q |
| |
|
||||||||||| || || ||||| ||||||||||||||||||| ||||||| ||| | |||||||||||| |||| ||||||||||| |||| |||| |
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|
| T |
42363075 |
atatatttcccggtagagatgtattttgtacagaataaaattgaagcttggtctacaaaatggattgttcttaggacttttagctttgtttgccttct |
42363172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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