View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_29 (Length: 328)
Name: NF15351_low_29
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 318
Target Start/End: Complemental strand, 8137406 - 8137108
Alignment:
| Q |
20 |
gtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagcatattgacttggttctacnnnnnnng |
119 |
Q |
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| T |
8137406 |
gtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatgaagcatattgacttggttctactttttttg |
8137307 |
T |
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| Q |
120 |
gttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctgaaaattgtgatgtctaaag |
219 |
Q |
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| T |
8137306 |
gttcagttccagtgacaacagccaaaagggtagctagagaaaaaagatagagaagggaaggacctatagctcccatggctgcaaattgtgatgtctaaag |
8137207 |
T |
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| Q |
220 |
atgaagtagtgacatctatataaatgcaagaaaatgggccatgattttttaatgagttagttatgtcgtttaatcatcacaatacatattcaccctatg |
318 |
Q |
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| T |
8137206 |
atgaagtagtgacatctatataaatgcaagaaaatgggccatgattttttaatgggttagttatgtcgtttaatcatcacaatacatattgaccctatg |
8137108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 200
Target Start/End: Complemental strand, 8162066 - 8161883
Alignment:
| Q |
20 |
gtatgaacctggtaagcagaagaaccaattccaaagagaaaatcatcaggaaaaaggctcctattgaatga---agcatattgacttggttctacnnnnn |
116 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||| |||||||| |||||| |||||||| | || |
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| T |
8162066 |
gtatgaacctggtaagcagaagaaccgattccaaagagaaaatcagaaggaaaaagggtcctgttgaatgaagcagcatagtgacttggatgcacatgtt |
8161967 |
T |
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| Q |
117 |
nnggttcagttccagtgacaacagccaaaagggtagctatagaaaaaagatagagaagggaaggagctatagctcccatggctg |
200 |
Q |
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| T |
8161966 |
gtgatgcagttccagtgacaacagccaaaagtgtagccagagaaaaaagatagaggaggaaatgacttatagctttcatggctg |
8161883 |
T |
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