View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15351_low_30 (Length: 314)

Name: NF15351_low_30
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15351_low_30
NF15351_low_30
[»] chr5 (11 HSPs)
chr5 (26-302)||(18934060-18934336)
chr5 (26-302)||(4560232-4560508)
chr5 (26-302)||(18883388-18883664)
chr5 (38-230)||(22540229-22540421)
chr5 (76-235)||(42131343-42131502)
chr5 (38-229)||(18259128-18259319)
chr5 (38-220)||(34080736-34080918)
chr5 (173-229)||(32386547-32386603)
chr5 (173-229)||(239963-240019)
chr5 (173-229)||(14024994-14025050)
chr5 (253-302)||(16081680-16081729)
[»] chr1 (14 HSPs)
chr1 (26-302)||(22065117-22065393)
chr1 (26-302)||(2601190-2601465)
chr1 (38-230)||(23949717-23949909)
chr1 (38-230)||(5308661-5308853)
chr1 (40-230)||(50952555-50952745)
chr1 (69-230)||(42677241-42677402)
chr1 (38-230)||(23084898-23085090)
chr1 (38-220)||(34553870-34554052)
chr1 (162-230)||(8059849-8059917)
chr1 (238-302)||(11531454-11531518)
chr1 (177-308)||(12673179-12673310)
chr1 (173-229)||(16855004-16855060)
chr1 (174-229)||(6294076-6294131)
chr1 (174-229)||(39476120-39476175)
[»] chr3 (12 HSPs)
chr3 (26-302)||(42794493-42794769)
chr3 (26-302)||(46428563-46428839)
chr3 (26-302)||(54812164-54812440)
chr3 (26-302)||(43912168-43912444)
chr3 (38-230)||(27156155-27156347)
chr3 (38-230)||(54346754-54346946)
chr3 (173-229)||(37503148-37503204)
chr3 (174-229)||(25905871-25905926)
chr3 (155-230)||(43813083-43813158)
chr3 (175-229)||(1182549-1182603)
chr3 (114-183)||(33779404-33779473)
chr3 (27-79)||(51841333-51841385)
[»] chr2 (15 HSPs)
chr2 (26-302)||(17290036-17290312)
chr2 (38-230)||(13186907-13187099)
chr2 (38-230)||(7305068-7305260)
chr2 (159-299)||(26381185-26381325)
chr2 (93-230)||(6598993-6599130)
chr2 (130-230)||(40426155-40426255)
chr2 (175-229)||(11995725-11995779)
chr2 (64-230)||(37307282-37307448)
chr2 (174-229)||(24126407-24126462)
chr2 (174-229)||(40615032-40615087)
chr2 (27-144)||(28371951-28372068)
chr2 (165-193)||(6372683-6372711)
chr2 (165-229)||(17526680-17526744)
chr2 (38-86)||(40190551-40190599)
chr2 (173-229)||(42865976-42866032)
[»] chr8 (11 HSPs)
chr8 (26-302)||(44145712-44145987)
chr8 (26-302)||(38560534-38560810)
chr8 (38-230)||(1636017-1636209)
chr8 (38-230)||(26616714-26616904)
chr8 (158-298)||(9031516-9031656)
chr8 (38-230)||(456348-456540)
chr8 (163-223)||(1362962-1363022)
chr8 (173-229)||(42000334-42000390)
chr8 (173-229)||(45093500-45093556)
chr8 (173-219)||(35808261-35808307)
chr8 (177-302)||(40536282-40536407)
[»] chr4 (10 HSPs)
chr4 (26-302)||(47597506-47597782)
chr4 (139-302)||(4228291-4228454)
chr4 (26-302)||(43270709-43270982)
chr4 (38-228)||(36894406-36894596)
chr4 (38-228)||(34389795-34389985)
chr4 (173-229)||(44307583-44307639)
chr4 (173-229)||(1217218-1217274)
chr4 (173-229)||(1369493-1369549)
chr4 (173-229)||(28945360-28945416)
chr4 (159-223)||(11896048-11896112)
[»] chr7 (11 HSPs)
chr7 (27-302)||(24473456-24473731)
chr7 (112-302)||(24468593-24468783)
chr7 (40-230)||(48618955-48619145)
chr7 (38-220)||(8019742-8019924)
chr7 (173-229)||(8035770-8035826)
chr7 (173-229)||(5350053-5350109)
chr7 (173-229)||(38110666-38110722)
chr7 (48-230)||(29213716-29213899)
chr7 (174-229)||(46045967-46046022)
chr7 (38-83)||(38110812-38110857)
chr7 (254-302)||(45752643-45752691)
[»] chr6 (2 HSPs)
chr6 (26-302)||(1222896-1223154)
chr6 (174-276)||(6262249-6262351)
[»] scaffold0003 (1 HSPs)
scaffold0003 (33-287)||(355917-356172)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 18934060 - 18934336
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  18934060 ggagcattttgatcatcttattgtggaaagtgacccgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagtt 18934159  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18934160 catcgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagca 18934259  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18934260 tttctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 18934336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 4560508 - 4560232
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| ||||||| ||||||||||||||    
T  4560508 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgaaaagttcaagtttaatgggaatatgcctattttagtt 4560409  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4560408 catcgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagca 4560309  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  4560308 tttctgtgaatcatttgaatttgattattttggagactcctcctactgagcttcgaaagctcatgtttgatgatatt 4560232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 18883388 - 18883664
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||| ||||||| |||||| |||||||||||||||||||||||  ||||||| ||||||| ||||||| | ||||||||||||    
T  18883388 ggagcattttgatcatcttatagtggaaaatgactcaaagatattgatcgacatgatttcggacaagtttaagtttaatgggaatatccctattttagtt 18883487  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||||||||| ||||||||||||||||    
T  18883488 cattgtatcaggaagctactgagaatggattgacatgtgcaaatcaaccatacttggcgcgaaggaaatagatatgccgattggcttgctaattttagca 18883587  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||    
T  18883588 tttttgtgaataatttgaatttgattattttggagactcctcctactgagcttcaaaagctcatgtttgatgatatt 18883664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 22540229 - 22540421
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| || |||||||| || ||||| ||||||||| |||||||| | || ||||||||   ||| ||| | ||| |||||||| | || ||| ||    
T  22540229 tcatcttatagttgaaagtgattcaaagattttgatcgacgtgatttctgataatttcaagttcgatggaaatattcctgttttagtttactggatccgg 22540328  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||||  |||  |||  |||| ||| ||||||||||||||||| |||||||||| ||||  |||||||| |||||||| |||||||||    
T  22540329 aagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtaaaggaaataggagtgttgattgactcgctaatttaagcatttct 22540421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 76 - 235
Target Start/End: Original strand, 42131343 - 42131502
Alignment:
Q  76 acatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaacca 175  Q
    ||||||||||| | ||||||  ||||| ||| ||| |  ||||||||||||||||||| ||||||||  | | |||| |||| |||||||||||||  ||    
T  42131343 acatgatttctgagaagttccggtttaatggaaatatctctattttagttcattgtattaggaagctattaaaaatgaattggcatgtgcaaatcagtca 42131442  T
Q  176 tacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttctgtgaa 235  Q
    | ||| | |  ||||||||||||||| ||||||||||||| |||||| ||||||||||||    
T  42131443 tgcttagtggaaaggaaatagaagtgtcgattgacttgctcattttaacatttctgtgaa 42131502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 38 - 229
Target Start/End: Complemental strand, 18259319 - 18259128
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || | ||| || | ||||||| | | | |||||||| |  | ||| ||    
T  18259319 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataattccaaattcaatgggaatattcttgttttagtttaccggatccgg 18259220  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||||||||  ||   |||| |||| ||| |||||||||| ||||| ||||||||||  ||||| ||||| || |||||||| ||||||||    
T  18259219 aagctgctgaagataagttgaaatgttcaactcaaccatacctggcgcgaaggaaatatgagtgctgattggctcgctaatttaagcatttc 18259128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 34080918 - 34080736
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| |  ||||| ||||| || ||||||||| | || |||||||| | || |||| | | | ||||||||||  | |||  |    
T  34080918 tcatcttatagtggaaagtgatttaaagattttgatggatatgatttctgataaattcaagttcaatgcgaatattcttgttttagttcaccggatccag 34080819  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattt 220  Q
    ||||||||||  |||| |||  |||| ||| ||||||||||||||||||||||||| |  ||||  ||||| |||||||||||    
T  34080818 aagctgctgaagatgggttggaatgttcaactcaaccatacttggcgtgaaggaaacatgagtgttgattggcttgctaattt 34080736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 32386547 - 32386603
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||||||||| || | |||||| ||||||||||||||||| ||||||||    
T  32386547 ccatacttggcgtgaaggcaacataagtgctgattgacttgctaatttcagcatttc 32386603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 240019 - 239963
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  240019 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 239963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 14024994 - 14025050
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  14024994 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 14025050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 302
Target Start/End: Original strand, 16081680 - 16081729
Alignment:
Q  253 ttttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    |||||||| ||||||||| |||||||| ||  ||||||||||||||||||    
T  16081680 ttttggagtctcctcctaatgagcttcaaagcctcatgtttgatgatatt 16081729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 245; Significance: 1e-136; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 22065393 - 22065117
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  22065393 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatgtgcctattttagtt 22065294  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  22065293 catcgtatcaggaggctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagca 22065194  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    | ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22065193 tatctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 22065117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 2601190 - 2601465
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||| || |||||| ||||||||||| || |||||||| |||||||||| |||| |||| |||||||||| || |||| |  |||||||||||    
T  2601190 ggagcattttggtcgtcttatagtggaaagtgattctaagatatt-atcgacatgaattctgacaaattcaagtttaatgagaatataactattttagtt 2601288  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    || | ||||| |||||||||||  ||| ||||  ||||||||||||| ||| ||||||   ||  ||||| ||||||  |||| |||||||| | |||||    
T  2601289 cactatatcatgaagctgctgaacatgaattgggatgtgcaaatcaatcattcttggcacaaacaaaatataagtgcttattggcttgctaactatagca 2601388  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||| |||| || |||||||||||||| |||||| || |||| ||| |||||||| ||||||  | ||||||||||||    
T  2601389 tttttgtggatcatttgaatttgattgttttggggaatccttctagtgagcttcaaaagcttctctttgatgatatt 2601465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 23949717 - 23949909
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||||||| | ||| |||||||| |  ||||| ||    
T  23949717 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccgtatccgg 23949816  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||||  |||  ||   |||| ||| |||||||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||    
T  23949817 aagctgctgaagatgagttagaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 23949909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 5308661 - 5308853
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||| ||| | ||| |||||||| |  ||||| ||    
T  5308661 tcatcttatagtggaaagtgaatcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgtatccgg 5308760  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    || |||||||  |||  |||  |||| ||| |||||||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||    
T  5308761 aatctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 5308853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 40 - 230
Target Start/End: Complemental strand, 50952745 - 50952555
Alignment:
Q  40 atcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcaggaa 139  Q
    ||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||||||| | | | |||||||| |  | ||| ||||    
T  50952745 atcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcatgttttagtttaccggatccggaa 50952646  T
Q  140 gctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||  |||  |||  |||| ||| ||||||||||||||||||||| |||||| ||||| ||||| || |||||| | |||||||||    
T  50952645 gctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaagaaaataggagtgctgattggctcgctaatataagcatttct 50952555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 69 - 230
Target Start/End: Original strand, 42677241 - 42677402
Alignment:
Q  69 ttgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcaggaagctgctgagaatggattgacatgtgcaaa 168  Q
    |||||||||||||||||| | || |||||||| | ||| ||| | ||| |||||||| |  ||||| ||||||||||||  |||  |||  |||| |||     
T  42677241 ttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgtatccggaagctgctgaagatgagttggaatgttcaac 42677340  T
Q  169 tcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    |||||||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||    
T  42677341 tcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 42677402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 23085090 - 23084898
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| |  ||||| |||||||||||||||| | | || |||||||| | ||||||| | | | |||||||| |  | ||| ||    
T  23085090 tcatcttatagtggaaagtgatttaaagattttgatcgacatgatttttgataatttcaagttcaatgggaatattcatgttttagtttaccggatccgg 23084991  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||||  |||  |||  |||| ||| ||||||||| |||||||||||||||||| ||||| ||||| || |||||||| |||||||||    
T  23084990 aagctgctgaagatgagttggaatgttcaactcaaccatatttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 23084898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 34554052 - 34553870
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| || ||||||||||||||| | || ||  | |||  ||||||| |  ||||||||||||| || |||  |    
T  34554052 tcatcttatagtggaaagtgattcaaagatttttatcgacatgatttctgataattttgaatttgatgggaatatttctattttagttcactggatccag 34553953  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattt 220  Q
    ||| ||||||  |||  ||   |||| ||| |||||||||||||| ||||||||||||||||||| |||||||| ||||||||    
T  34553952 aagatgctgaagatgagttagaatgttcaactcaaccatacttggtgtgaaggaaatagaagtgctgattgactcgctaattt 34553870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 230
Target Start/End: Complemental strand, 8059917 - 8059849
Alignment:
Q  162 gtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    |||||| |||||||||| ||||| || |||||||||||||| ||||| ||||||||||||||| |||||    
T  8059917 gtgcaattcaaccatacctggcgcgagggaaatagaagtgctgattggcttgctaattttagcttttct 8059849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 238 - 302
Target Start/End: Original strand, 11531454 - 11531518
Alignment:
Q  238 atttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    |||||||||||||||||||||||||| ||||||   |||||  ||||||||||||||||||||||    
T  11531454 atttgaatttgattattttggagacttctcctacccagctttaaaagctcatgtttgatgatatt 11531518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 177 - 308
Target Start/End: Complemental strand, 12673310 - 12673179
Alignment:
Q  177 acttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttctgtgaataatttgaatttgattattttggagactcctcctattgagc 276  Q
    |||||||||||||| |||| | |||| ||||| || || ||||||||| | ||| |||||  || |||| ||||  ||||||||  |||||||| |||||    
T  12673310 acttggcgtgaaggcaatatatgtgctgattggctagccaattttagcttatctttgaattcttggaatctgatagttttggagtatcctcctaatgagc 12673211  T
Q  277 ttcgaaagctcatgtttgatgatattcttcga 308  Q
    ||| ||  ||||||||||||||| || |||||    
T  12673210 ttcaaagcctcatgtttgatgatctttttcga 12673179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 16855004 - 16855060
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  16855004 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 16855060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 6294076 - 6294131
Alignment:
Q  174 catacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  6294076 catacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 6294131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 39476120 - 39476175
Alignment:
Q  174 catacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||||||||||||||| || | |||||| ||||| ||||||||||| ||||||||    
T  39476120 catacttggcgtgaaggcaacaaaagtgcagattgtcttgctaatttcagcatttc 39476175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 241; Significance: 1e-133; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 42794493 - 42794769
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||    
T  42794493 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttaatgggaatatgcctattttagtt 42794592  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  42794593 catcgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagaa 42794692  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    | | ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42794693 tatatgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 42794769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 46428563 - 46428839
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  46428563 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagtt 46428662  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||    
T  46428663 catcgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcatgaaggaaatagaagtgccgattggcttgctaattttagca 46428762  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428763 tttatgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 46428839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 54812440 - 54812164
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  54812440 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagtt 54812341  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  54812340 catcgtatcaggaagctgctgagaatggattagcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagca 54812241  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  54812240 tttctgtgaatcatttgaatttgattatttcggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 54812164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 43912444 - 43912168
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||| || ||||||||||| |||||||||||| ||||||||||| | ||||||||||||| ||||||| |  ||||||||| |    
T  43912444 ggagcattttgatcatcttatagttgaaagtgactcaaagatattgatcaacatgatttctgagaagttcaagtttaatgggaatatctctattttagct 43912345  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||| ||| ||||||||| || ||||||||||||||||  ||||| |||| ||||| |||||   |||  ||||||||||||| ||    
T  43912344 catcgtatcaggaagctgttgaaaatggattggcaagtgcaaatcaaccatatctggcgcgaagaaaatataagtgtatattaccttgctaattttaaca 43912245  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||| ||||||||||| || |||||||||||||  ||| |||||||| ||| |||| |||||||||||||    
T  43912244 tttctgtgaatcatttgaatttggttgttttggagactccagctactgagcttcaaaacctcacgtttgatgatatt 43912168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 27156347 - 27156155
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||||| ||||||| | ||| |||||||| |  | ||| ||    
T  27156347 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagtttaatgggaatattcctgttttagtttaccggatccgg 27156248  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||||  |||  |||  |||| ||| |||||||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||    
T  27156247 aagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttcagcatttct 27156155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 54346754 - 54346946
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||| ||| | ||| |||||||| |  ||||| ||    
T  54346754 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgtatccgg 54346853  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||||  |||  |||  |||| ||| ||| |||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||    
T  54346854 aagctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 54346946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 37503148 - 37503204
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||||||| |||||||| || |||||||| ||||||||||||||||||||||||||    
T  37503148 ccatacttgacgtgaaggcaacagaagtgcagattgacttgctaattttagcatttc 37503204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 25905871 - 25905926
Alignment:
Q  174 catacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||||||| ||||||| || |||||||| ||||||||||||||||| ||||||||    
T  25905871 catacttggtgtgaaggcaacagaagtgcagattgacttgctaatttcagcatttc 25905926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 230
Target Start/End: Original strand, 43813083 - 43813158
Alignment:
Q  155 ttgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    |||| |||| ||| ||||||||| |||||||||||||||| | ||||| |||||||| ||||| || |||||||||    
T  43813083 ttgaaatgttcaactcaaccataattggcgtgaaggaaattggagtgctgattgactcgctaacttaagcatttct 43813158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 229
Target Start/End: Original strand, 1182549 - 1182603
Alignment:
Q  175 atacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||||||| || | ||||||  |||||||||||||||| ||||||||    
T  1182549 atacttggcgtgaaggcaacataagtgcatattgacttgctaatttcagcatttc 1182603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 183
Target Start/End: Original strand, 33779404 - 33779473
Alignment:
Q  114 cctattttagttcattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggc 183  Q
    ||||||||  ||||| |||| ||||||||| ||| |||| ||||||||||| |||||||| ||| |||||    
T  33779404 cctattttgattcatcgtattaggaagctgttgaaaatgaattgacatgtgaaaatcaactatatttggc 33779473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 51841385 - 51841333
Alignment:
Q  27 gagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacat 79  Q
    |||||||||  ||||||||| ||||| |||||||| ||| |||||||||||||    
T  51841385 gagcatttttctcatcttatagtggagagtgactcaaagttattgatcgacat 51841333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 17290036 - 17290312
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  17290036 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagtt 17290135  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |    
T  17290136 catcgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatatttggcgtgaaggaaatagaagtgccgattggcttgctaattttagta 17290235  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17290236 tttctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 17290312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 13186907 - 13187099
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||| ||| | ||| |||||||| |  ||||| ||    
T  13186907 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatattcctgttttagtttaccgtatccgg 13187006  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||||  | |  |||  |||| ||| |||| ||||||||||||||||||||||| ||||| ||||| || |||||||| |||||||||    
T  13187007 aagctgctgaagacgagttggaatgttcaactcaatcatacttggcgtgaaggaaataggagtgctgattggctcgctaatttaagcatttct 13187099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 7305260 - 7305068
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| | || |||| | ||| ||||| || |  | ||| ||    
T  7305260 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctaataatttcaagttcaatgagaatattcctgttttactttaccggatccgg 7305161  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    || |||||||  |||  |||  || | ||| |||||||||||||||||||||||||||| ||||| ||||| ||  ||||||| |||||||||    
T  7305160 aacctgctgaagatgagttggaattttcaactcaaccatacttggcgtgaaggaaataggagtgctgattggctctctaatttaagcatttct 7305068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 299
Target Start/End: Complemental strand, 26381325 - 26381185
Alignment:
Q  159 catgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttctgtgaataatttgaatttgattattttgg 258  Q
    |||||||||||||||||||||| | |||||||||||| ||||   ||||| ||||||||  | |||||| ||  | || ||||||||||| || ||||||    
T  26381325 catgtgcaaatcaaccatacttcgtgtgaaggaaataaaagttttgattggcttgctaacatcagcattactaaggatcatttgaatttgtttgttttgg 26381226  T
Q  259 agactcctcctattgagcttcgaaagctcatgtttgatgat 299  Q
    |||||||||||| ||| |||| ||||||| | |||||||||    
T  26381225 agactcctcctagtgaacttcaaaagctcctatttgatgat 26381185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 93 - 230
Target Start/End: Original strand, 6598993 - 6599130
Alignment:
Q  93 ttcaagtttagtgggaatgtgcctattttagttcattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaa 192  Q
    |||||||| | ||||||| | ||| ||||||||||  | ||| ||||| ||||||  ||| ||||  |||| ||| ||||||||| ||||||||||||||    
T  6598993 ttcaagttcaatgggaatattcctgttttagttcaccggatccggaagttgctgaagatgaattggaatgttcaactcaaccataattggcgtgaaggaa 6599092  T
Q  193 atagaagtgccgattgacttgctaattttagcatttct 230  Q
    |||  ||||| ||||| || |||||||| |||||||||    
T  6599093 ataagagtgctgattggctcgctaatttaagcatttct 6599130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 230
Target Start/End: Complemental strand, 40426255 - 40426155
Alignment:
Q  130 gtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||| ||||||||||||  |||  |||  |||| ||| ||| ||||| |||| ||||||||||||| ||||| |||||||| |||||||| ||||||||    
T  40426255 gtatccggaagctgctgaagatgagttggaatgttcaactcacccatatttggtgtgaaggaaataggagtgctgattgactcgctaatttaagcatttc 40426156  T
Q  230 t 230  Q
    |    
T  40426155 t 40426155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 229
Target Start/End: Complemental strand, 11995779 - 11995725
Alignment:
Q  175 atacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||    
T  11995779 atacttggcgtgaaggcaacagaagtgcagattgtcttgctaatttcagcatttc 11995725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 230
Target Start/End: Complemental strand, 37307448 - 37307282
Alignment:
Q  64 agatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcaggaagctgctgagaatggattgacatgt 163  Q
    |||| |||||||||||||||||| | || |||||||| | || |||| | ||| |||||||| |  | ||| | ||| ||| ||  |||  |||| ||||    
T  37307448 agattttgatcgacatgatttctgataatttcaagttcaatgagaatattcctgttttagtttaccggatctgaaagttgccgaagatgagttgaaatgt 37307349  T
Q  164 gcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
     ||| ||||||||||||| |||||||||||||| ||||| ||||| || | ||| || |||||||||    
T  37307348 tcaactcaaccatacttgacgtgaaggaaataggagtgctgattggctcgttaacttaagcatttct 37307282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 24126462 - 24126407
Alignment:
Q  174 catacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||| ||||||||||| || | |||||| ||||||||||||||||| ||||||||    
T  24126462 catacatggcgtgaaggcaacataagtgcagattgacttgctaatttcagcatttc 24126407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 40615087 - 40615032
Alignment:
Q  174 catacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||||||||||||||| || |||||||| |||||  |||||||||| ||||||||    
T  40615087 catacttggcgtgaaggtaacagaagtgcagattggtttgctaatttcagcatttc 40615032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 144
Target Start/End: Complemental strand, 28372068 - 28371951
Alignment:
Q  27 gagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttc 126  Q
    ||||||||||||||||| || || |||||| |||| ||||||||| || | || |||| |  ||| |||||||||| ||| ||| |  |||||||||||     
T  28372068 gagcattttgatcatctcatagttgaaagttactctaagatattgttcaatataatttttgtcaatttcaagtttaatggaaatatttctattttagttt 28371969  T
Q  127 attgtatcaggaagctgc 144  Q
     ||  |||||||||||||    
T  28371968 tttacatcaggaagctgc 28371951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 193
Target Start/End: Original strand, 6372683 - 6372711
Alignment:
Q  165 caaatcaaccatacttggcgtgaaggaaa 193  Q
    |||||||||||||||||||||||||||||    
T  6372683 caaatcaaccatacttggcgtgaaggaaa 6372711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 165 - 229
Target Start/End: Original strand, 17526680 - 17526744
Alignment:
Q  165 caaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||| |||||||| | |||||| || || |||||||  | ||||||||||||||||||||||||    
T  17526680 caaattaaccatacattgcgtgagggcaacagaagtgtagtttgacttgctaattttagcatttc 17526744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 38 - 86
Target Start/End: Complemental strand, 40190599 - 40190551
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttct 86  Q
    ||||||||| ||||||||||| || ||||| |||||||| |||||||||    
T  40190599 tcatcttatagtggaaagtgattcaaagattttgatcgatatgatttct 40190551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 42865976 - 42866032
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||| ||||| || | |||||| ||||| ||||||||||| ||||||||    
T  42865976 ccatacttggcgggaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 42866032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 26 - 302
Target Start/End: Original strand, 44145712 - 44145987
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  44145712 ggagcattttgatcatcttat-gtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagtt 44145810  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  44145811 catcgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgctgattgacttgctaattttagca 44145910  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44145911 tttctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatggttgatgatatt 44145987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 38560810 - 38560534
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||| |||||||||| ||||||||||||||||||| |||||||| | | |||||| |||| ||||||| | ||||||||||||    
T  38560810 ggagcattttgatcatcttatagtggaaagtggctcgaagatattgatcgacgtgatttctgataggttcaaatttaatgggaatatccctattttagtt 38560711  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||    
T  38560710 catcgtatcaagaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcacgaaggaaatagaagtgccgattggcttgctaattttagca 38560611  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||| ||||||| |||||||||||||| ||||| ||||| |  | | |||||||| ||||||||||||||||||||||    
T  38560610 tttttgtgaatcatttgaatttgattgttttgaagacttcatccactgagcttcaaaagctcatgtttgatgatatt 38560534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 230
Target Start/End: Original strand, 1636017 - 1636209
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||||||| | ||| |||||||| |  ||||| ||    
T  1636017 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccgtatccgg 1636116  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||||  |||  |||  |||| ||| ||| |||||||| ||||||||||||||| ||||| ||||| || |||||||| | |||||||    
T  1636117 aagctgctgaagatgagttggaatgttcaactcacccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaatcatttct 1636209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 26616904 - 26616714
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||||||| | ||  | |||||| |  | ||| ||    
T  26616904 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcc--tgttagtttaccggatctgg 26616807  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||||  |||  |||  |||| ||| |||||||||||||||||||||||||||  ||| | ||||| ||  ||||||| |||||||||    
T  26616806 aagctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaatatgagtactgattggctcactaatttaagcatttct 26616714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 298
Target Start/End: Complemental strand, 9031656 - 9031516
Alignment:
Q  158 acatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttctgtgaataatttgaatttgattattttg 257  Q
    ||||||| |||| ||||||||||  |||||||||||||||||||  ||||| ||||| ||  ||||||||  |  | || ||||||||||| || |||||    
T  9031656 acatgtgaaaattaaccatacttaacgtgaaggaaatagaagtgttgattggcttgcaaacattagcattattaaggatcatttgaatttgctttttttg 9031557  T
Q  258 gagactcctcctattgagcttcgaaagctcatgtttgatga 298  Q
    ||||||| ||||| |||||||| ||  ||| ||||||||||    
T  9031556 gagactcttcctagtgagcttcaaagactcctgtttgatga 9031516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 38 - 230
Target Start/End: Complemental strand, 456540 - 456348
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||  ||||| || ||||||||| | || |||||||| | ||||||| | ||| ||||| ||||  | ||| ||    
T  456540 tcatcttatagtggaaagtgattcaaagagtttgattgatatgatttctgataatttcaagttcaatgggaatattcctgttttatttcaccggatccgg 456441  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||| ||||  |||  |||  |||| ||| ||||||||||||| || ||||||||||| |||||  |||| || |||||||| | |||||||    
T  456440 aagctactgaagatgagttggaatgttcaactcaaccatacttgacgcgaaggaaataggagtgctaattggctcgctaatttaaacatttct 456348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 223
Target Start/End: Original strand, 1362962 - 1363022
Alignment:
Q  163 tgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttag 223  Q
    ||||| |||||||||| ||||  || |||||||||||||| ||||| ||||||||||||||    
T  1362962 tgcaattcaaccatacctggcaggagggaaatagaagtgctgattggcttgctaattttag 1363022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 42000334 - 42000390
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||||||||| || | |||||| ||||| ||||||||||| ||||||||    
T  42000334 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 42000390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 45093500 - 45093556
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||||||||| || |||||||| ||||| ||||| ||||| ||||||||    
T  45093500 ccatacttggcgtgaaggcaacagaagtgcagattggcttgcaaatttcagcatttc 45093556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 219
Target Start/End: Original strand, 35808261 - 35808307
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaatt 219  Q
    |||||||||||||||||| || |||||||| ||||| ||||||||||    
T  35808261 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatt 35808307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 302
Target Start/End: Complemental strand, 40536407 - 40536282
Alignment:
Q  177 acttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttctgtgaataatttgaatttgattattttggagactcctcctattgagc 276  Q
    ||||||||||||||  | ||| |||| ||||| || || ||||||||| | ||| |||||  || |||| || |   ||||||| ||||||||| |||||    
T  40536407 acttggcgtgaaggcgacagatgtgctgattggctagccaattttagcttatctttgaattcttggaatctggtagctttggagtctcctcctaatgagc 40536308  T
Q  277 ttcgaaagctcatgtttgatgatatt 302  Q
    ||| ||  ||||||||||||||||||    
T  40536307 ttcaaagcctcatgtttgatgatatt 40536282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 47597782 - 47597506
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||||||||||||    
T  47597782 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagtt 47597683  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||    
T  47597682 cattgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcataaaggaaatagaagtgccgattggcttgctaattttagca 47597583  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  47597582 tttttgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctgatgtttgattatatt 47597506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 139 - 302
Target Start/End: Original strand, 4228291 - 4228454
Alignment:
Q  139 agctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttctgtgaataa 238  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |    
T  4228291 agctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcatttctgtgaatta 4228390  T
Q  239 tttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4228391 tttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 4228454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 43270982 - 43270709
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||| ||||||||||| ||  |||||||||| |||||||||||||||||||||| | |||| |||||| ||| ||| ||| | ||||||||||||    
T  43270982 ggagcatttagatcatcttatagttaaaagtgactctaagatattgatcgacatgatttttgacaatttcaagcttaatggaaatatccctattttagtt 43270883  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||| ||||||  | | |||  |||  ||| ||||||||||||||| ||| ||||||| ||||| |||||  || ||||||||||| |||| ||    
T  43270882 catcgtatcaagaagctattaaaaattaattagcatttgcaaatcaaccatatttgacgtgaagaaaatataagtg--ga-tgacttgctaactttaaca 43270786  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||| |||| ||||||| ||||||| | |||||||||||||||||||| |||||  ||| ||||| ||| ||||||||    
T  43270785 tttttgtggataattttaatttgactgttttggagactcctcctattaagctttaaaaactcattttttatgatatt 43270709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 36894596 - 36894406
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||||| || |||||||| | || |||| | ||| |||||||| |  | ||| ||    
T  36894596 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctaataatttcaagttcaatgtgaatattcctgttttagtttaccggatccgg 36894497  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcattt 228  Q
    ||| ||||||  |||  |||  |||| ||| |||||||||||||||||||||||||||| ||||  ||||| || |||||||| |||||||    
T  36894496 aagttgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataggagtgttgattggctcgctaatttaagcattt 36894406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 38 - 228
Target Start/End: Complemental strand, 34389985 - 34389795
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||||||| | | | |||||||| |  | ||| |     
T  34389985 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcttgttttagtttaccggatccga 34389886  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcattt 228  Q
    ||||||||||  |||  |||  |||| ||| |||||||||||| ||||||||||||||| ||||| ||||| || |||||||| |||||||    
T  34389885 aagctgctgaagatgatttggaatgttcaactcaaccatacttagcgtgaaggaaataggagtgctgattggctcgctaatttaagcattt 34389795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 44307583 - 44307639
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||    
T  44307583 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttc 44307639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 1217218 - 1217274
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  1217218 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 1217274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 1369493 - 1369549
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  1369493 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 1369549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 28945416 - 28945360
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  28945416 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 28945360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 11896112 - 11896048
Alignment:
Q  159 catgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttag 223  Q
    ||||| || ||||||||||| ||||||||||||||||||   || ||||| || |||||||||||    
T  11896112 catgttcatatcaaccatacatggcgtgaaggaaatagatcagcagattggctagctaattttag 11896048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 27 - 302
Target Start/End: Original strand, 24473456 - 24473731
Alignment:
Q  27 gagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttc 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||||||||||||||    
T  24473456 gagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacaagttcaagtttaatgggaatatgcctattttagttc 24473555  T
Q  127 attgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcat 226  Q
    || |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  24473556 atcgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggcttgctaattttagcat 24473655  T
Q  227 ttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    |||||||||| ||||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||    
T  24473656 ttctgtgaatcatttgaatttgattattttcgaaactcctcctactcagcttcgaaagctcatgtttgatgatatt 24473731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 112 - 302
Target Start/End: Original strand, 24468593 - 24468783
Alignment:
Q  112 tgcctattttagttcattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgact 211  Q
    ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  24468593 tgcctattttagttcatcgtatcaggaagctgctgagaatggattggcatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattggct 24468692  T
Q  212 tgctaattttagcatttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||| | |||||||||||||||||||||||||||||    
T  24468693 tgctaattttagcatttctgtgaatcatttgaatttgattattttcgaaactcctcctactcagcttcgaaagctcatgtttgatgatatt 24468783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 40 - 230
Target Start/End: Original strand, 48618955 - 48619145
Alignment:
Q  40 atcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcaggaa 139  Q
    ||||||| ||||||||||| || ||||| ||||| |||||||||||| | || |||||||||| ||||||| | ||| |||||||| | |||||| ||||    
T  48618955 atcttatagtggaaagtgattcaaagattttgattgacatgatttctgataatttcaagtttaatgggaatattcctgttttagtttactgtatccggaa 48619054  T
Q  140 gctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
    ||||||||  |||  |||  |||| ||| |||||||||||||||||||||||||||  ||||| ||||| || |||||||| |||||||||    
T  48619055 gctgctgaagatgagttggaatgttcaactcaaccatacttggcgtgaaggaaataagagtgctgattggctcgctaatttaagcatttct 48619145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 38 - 220
Target Start/End: Complemental strand, 8019924 - 8019742
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcagg 137  Q
    ||||||||| ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||||||| | ||| |||||||| |  ||||| ||    
T  8019924 tcatcttatagtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatgggaatattcctgttttagtttaccgtatccgg 8019825  T
Q  138 aagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattt 220  Q
    || |||||||  |||  |||  |||| ||| ||| |||||||||||||||||||||||| ||||| ||||| || ||||||||    
T  8019824 aatctgctgaagatgagttggaatgttcaactcacccatacttggcgtgaaggaaataggagtgctgattggctcgctaattt 8019742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 8035770 - 8035826
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||||||||| || |||||||| ||||| ||||||||||| ||||||||    
T  8035770 ccatacttggcgtgaaggcaacagaagtgcagattggcttgctaatttcagcatttc 8035826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Original strand, 5350053 - 5350109
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||||||||| || | |||||| ||||| ||||||||||| ||||||||    
T  5350053 ccatacttggcgtgaaggcaacaaaagtgcagattggcttgctaatttcagcatttc 5350109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 229
Target Start/End: Complemental strand, 38110722 - 38110666
Alignment:
Q  173 ccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    |||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  38110722 ccatacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 38110666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 230
Target Start/End: Complemental strand, 29213899 - 29213716
Alignment:
Q  48 gtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgtatcaggaagctgctga 147  Q
    ||||||||||| || ||||| |||||||||||||||||| | || |||||||| | ||| ||| |  || ||||| ||||  | |||  ||||||  |||    
T  29213899 gtggaaagtgattcaaagattttgatcgacatgatttctgataatttcaagttcaatggaaatatttctgttttacttcaccggatccagaagctattga 29213800  T
Q  148 gaatggattgacatgtgcaaatcaaccatacttggcgtg-aaggaaatagaagtgccgattgacttgctaattttagcatttct 230  Q
      |||  |||  |||| ||| |||||||||||||||||| ||| ||| || ||||  |||||||| |||||||| |||||||||    
T  29213799 agatgagttggaatgttcaactcaaccatacttggcgtgaaagaaaaaaggagtgttgattgactcgctaatttaagcatttct 29213716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 46045967 - 46046022
Alignment:
Q  174 catacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttc 229  Q
    ||||||||||| ||||| || |||||||| ||||| ||||||||||| ||||||||    
T  46045967 catacttggcgggaaggcaacagaagtgcagattggcttgctaatttcagcatttc 46046022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 38110857 - 38110812
Alignment:
Q  38 tcatcttattgtggaaagtgactcgaagatattgatcgacatgatt 83  Q
    ||||||||| ||||| |||||||| ||||||||| |||||||||||    
T  38110857 tcatcttatagtggagagtgactcaaagatattggtcgacatgatt 38110812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 302
Target Start/End: Complemental strand, 45752691 - 45752643
Alignment:
Q  254 tttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||| ||||||||| |||||||| ||  ||||||||||||||||||    
T  45752691 tttggagtctcctcctaatgagcttcaaagcctcatgtttgatgatatt 45752643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 26 - 302
Target Start/End: Complemental strand, 1223154 - 1222896
Alignment:
Q  26 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagtt 125  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||||||||||||||||||||    
T  1223154 ggagcattttgatcatcttattgtggaaagtgactcgaagatattgatcgacatgatttctgacgagttcaagtttaatgggaatgtgcctattttagtt 1223055  T
Q  126 cattgtatcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagca 225  Q
    ||| |||||||||||||||||||||||||||| |||                  ||||||||||||||||||||||||||||| ||||||||||||||||    
T  1223054 catcgtatcaggaagctgctgagaatggattggcat------------------tggcgtgaaggaaatagaagtgccgattggcttgctaattttagca 1222973  T
Q  226 tttctgtgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 302  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1222972 tttctgtgaatcatttgaatttgattattttggagactcctcctattgagcttcgaaagctcatgtttgatgatatt 1222896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 276
Target Start/End: Original strand, 6262249 - 6262351
Alignment:
Q  174 catacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttctgtgaataatttgaatttgattattttggagactcctcctattg 273  Q
    |||||||| || ||||| ||||||||||| |||||||||| |||||| ||| || |||||||| ||| ||||||  || ||||| |||  ||||||| ||    
T  6262249 catacttgacgagaaggcaatagaagtgctgattgacttgttaatttcagccttactgtgaattattggaattttgttgttttgaagaaccctcctagtg 6262348  T
Q  274 agc 276  Q
    |||    
T  6262349 agc 6262351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 33 - 287
Target Start/End: Original strand, 355917 - 356172
Alignment:
Q  33 tttgatcatcttattgtggaaagtgactcg-aagatattgatcgacatgatttctaacaagttcaagtttagtgggaatgtgcctattttagttcattgt 131  Q
    |||||||||||||| || |||| ||||||  ||||||||||||||||| |||| | |||| |||||||||| | ||||| | |||||||||||||||  |    
T  355917 tttgatcatcttatagtagaaaatgactcttaagatattgatcgacattatttgtcacaatttcaagtttaataggaatatccctattttagttcatcat 356016  T
Q  132 atcaggaagctgctgagaatggattgacatgtgcaaatcaaccatacttggcgtgaaggaaatagaagtgccgattgacttgctaattttagcatttctg 231  Q
    || |||||| |||||| |||| ||| |||||||||||||||| ||| ||| |  |||| ||||| |||||| |||| ||||||||| |||||| ||| |     
T  356017 attaggaagttgctgaaaatgaattaacatgtgcaaatcaactatatttgacccgaagaaaatacaagtgctgattaacttgctaactttagcgttttta 356116  T
Q  232 tgaataatttgaatttgattattttggagactcctcctattgagcttcgaaagctc 287  Q
    || || | |||||||||||| ||||||||| |||||||| ||| | || |||||||    
T  356117 tggatcaattgaatttgattgttttggagagtcctcctagtgaccatcaaaagctc 356172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University