View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_31 (Length: 314)
Name: NF15351_low_31
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_31 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 314
Target Start/End: Complemental strand, 37628937 - 37628647
Alignment:
| Q |
18 |
actaattccttgaatctttgttccatgcatttcctgtagtgttctttggttaacctctccacagtgtccattaagtcatgaggtatgccatgattcacca |
117 |
Q |
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| T |
37628937 |
actaattccttgaatctttgttccatgcatttcctgtagtgttctttggttaacctctccacagtgtccattaagtcatgaggtatgccatgattcacca |
37628838 |
T |
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| Q |
118 |
gctacnnnnnnncaaacatgaatagagatttagagaccaatgtagaaatttatatgaaacgaatattgagttcataaagtacctcaaagaatccccagtt |
217 |
Q |
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| T |
37628837 |
gctacaaaaaaacaaacatgaatagagatttagagaccaatgtagaaatttatatgaaacgaatattgagttcataaagtacctcaaagaatccccagtt |
37628738 |
T |
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| Q |
218 |
ttcacaagcatccttgattttctccatagtagcttttctctcatcaccattggcattgaggttttctaagttgataattgggaagttatccatattt |
314 |
Q |
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| T |
37628737 |
ttcacaagcatccttgattttctccatagtagcttttctctcatcac------cattcaggttttctaagttgataattgggaagttatccatattt |
37628647 |
T |
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Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 36872516 - 36872598
Alignment:
| Q |
39 |
tccatgcatttcctgtagtgttctttggttaacctctccacagtgtccattaagtcatgaggtatgccatgattcaccagcta |
121 |
Q |
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| T |
36872516 |
tccatgcatttcctatagtgctctttggtcaacctctccaatgtgtccataaggtcatggggtataccatgattcaccagcta |
36872598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 196 - 269
Target Start/End: Original strand, 36872705 - 36872778
Alignment:
| Q |
196 |
gtacctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctcatcaccattg |
269 |
Q |
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| T |
36872705 |
gtacctcaaagaatccccaattctcacaagcatccttaattttctccatggtatcttttctttcaacaccattg |
36872778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 195 - 259
Target Start/End: Complemental strand, 8926214 - 8926150
Alignment:
| Q |
195 |
agtacctcaaagaatccccagttttcacaagcatccttgattttctccatagtagcttttctctc |
259 |
Q |
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| T |
8926214 |
agtacctcaaagaagccccagttctcacaagcatctttgatcatctccatggtagcttttctctc |
8926150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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