View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15351_low_35 (Length: 285)

Name: NF15351_low_35
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15351_low_35
NF15351_low_35
[»] chr6 (5 HSPs)
chr6 (134-266)||(11437312-11437444)
chr6 (1-87)||(11437183-11437265)
chr6 (172-236)||(11430033-11430097)
chr6 (172-244)||(11422852-11422924)
chr6 (19-79)||(11429889-11429949)
[»] chr1 (1 HSPs)
chr1 (174-237)||(44907711-44907774)


Alignment Details
Target: chr6 (Bit Score: 106; Significance: 4e-53; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 134 - 266
Target Start/End: Original strand, 11437312 - 11437444
Alignment:
Q  134 ctctatctattaacacacatggaatttgannnnnnnnngacataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcaca 233  Q
    |||||||||||||||||||||||||||||         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11437312 ctctatctattaacacacatggaatttgaattttttttgacataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcaca 11437411  T
Q  234 agacacgcgccgccaatcatccgcggaatatgc 266  Q
    |||||||||||||||||||||||||||||||||    
T  11437412 agacacgcgccgccaatcatccgcggaatatgc 11437444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 11437183 - 11437265
Alignment:
Q  1 atttttgacgtcgcggtgtaaattgtggttgccaacatttttcaaaaccttgatatgcactctaacatgcttaactcatatctgcaa 87  Q
    |||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  11437183 atttttgacgtcgcggtgtaaattgtg----ccaacatttttcaaaaccttgatatgcactctaacatgcttaactcatttctgcaa 11437265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 172 - 236
Target Start/End: Original strand, 11430033 - 11430097
Alignment:
Q  172 gacataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcacaaga 236  Q
    ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11430033 gacataccaattgatcttttgcaatgaagaacggcttcataaattgagctatcagaatcacaaga 11430097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 172 - 244
Target Start/End: Original strand, 11422852 - 11422924
Alignment:
Q  172 gacataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcacaagacacgcgcc 244  Q
    ||||||||||||||||||||||||||||||||||| | |||||||||  | ||||||||||||||||| ||||    
T  11422852 gacataccaatggatcttttgcaatgaagaacagcattataaattgaaatttcagaatcacaagacacacgcc 11422924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 11429889 - 11429949
Alignment:
Q  19 taaattgtggttgccaacatttttcaaaaccttgatatgcactctaacatgcttaactcat 79  Q
    ||||| ||| |||| ||| ||||||||||||||||| |||||| || ||||||||| ||||    
T  11429889 taaatggtgtttgcaaacctttttcaaaaccttgatgtgcactttagcatgcttaattcat 11429949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 44907774 - 44907711
Alignment:
Q  174 cataccaatggatcttttgcaatgaagaacagcttcataaattgagctatcagaatcacaagac 237  Q
    |||||||||||||||||||||||| ||||| || ||||  |||||||| |||||||||||||||    
T  44907774 cataccaatggatcttttgcaatggagaactgcctcatgtattgagctttcagaatcacaagac 44907711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University