View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_37 (Length: 257)
Name: NF15351_low_37
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_37 |
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Alignment Details
Target: chr7 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 5067340 - 5067582
Alignment:
| Q |
1 |
acattagactttatagaacacatgcaccaaagtaaccaatcaaatgatgatgatggnnnnnnnnnnnnnnnnncatgtgaagttgtttatgatttttacc |
100 |
Q |
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| T |
5067340 |
acattagactt-atagaacacatgcaccaaagtaaccaatcaaatgatgatgatggaaaaacaaaacaaaaaacatgtgaagttgtttatgatttttacc |
5067438 |
T |
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| Q |
101 |
ttgacctttgatttttcatgaagttaggaccttgtttaagaaactcggttgtttctccaaaaacaggccaccccattgttccttgtggcaaacctttcct |
200 |
Q |
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| T |
5067439 |
ttgacctttgatttttcatgaagttaggaccttgtttaagaaactcagttgtttctccaaaaacaggccaccccattgttccttgtggcaaacctttcct |
5067538 |
T |
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| Q |
201 |
tctgtatcttacctcattccacttcaaaagagcagagcaaaaac |
244 |
Q |
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| T |
5067539 |
tctgtatcttacctcattccacttcaaaagagcagagcaaaaac |
5067582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 5591605 - 5591756
Alignment:
| Q |
93 |
tttttaccttgacctttgatttttcatgaagttaggaccttgtttaagaaactcggttgtttctccaaaaacaggccaccccattgttccttgtggcaaa |
192 |
Q |
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| T |
5591605 |
tttttaccttaatctttggtttttcatgaaatttggaccttgtttaagaaactcagttgtttctccaaaaactggccatcccattgttccaggtggcaaa |
5591704 |
T |
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| Q |
193 |
cctttccttctgtatcttacctcattccacttcaaaagagcagagcaaaaac |
244 |
Q |
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| T |
5591705 |
cctttcttcctataccttacttcattccacctcaagagagcagagcaaaaac |
5591756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 93 - 244
Target Start/End: Original strand, 976067 - 976218
Alignment:
| Q |
93 |
tttttaccttgacctttgatttttcatgaagttaggaccttgtttaagaaactcggttgtttctccaaaaacaggccaccccattgttccttgtggcaaa |
192 |
Q |
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|||||||||| | ||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
976067 |
tttttaccttaatctttggtttttcatgaaacttggaccttgtttaagaaactcagttgtttctccaaaaactggccaccccattgttccaggtggcaaa |
976166 |
T |
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| Q |
193 |
cctttccttctgtatcttacctcattccacttcaaaagagcagagcaaaaac |
244 |
Q |
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|||||| | || || ||||| |||||||| |||| |||||||||||||||| |
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| T |
976167 |
cctttcttcctataccttacttcattccatctcaagagagcagagcaaaaac |
976218 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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