View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_38 (Length: 250)
Name: NF15351_low_38
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_38 |
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| [»] scaffold0648 (1 HSPs) |
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| [»] scaffold0274 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 2 - 235
Target Start/End: Complemental strand, 52472842 - 52472609
Alignment:
| Q |
2 |
aggagcacagaaccaactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataa |
101 |
Q |
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|||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472842 |
aggaacacaaaaccaactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataa |
52472743 |
T |
|
| Q |
102 |
gttcattgtaatttgaagcatcattaatggcaatatcaaattgcttaaaactttggaattttatcagaatttcatctttgatatttgcatggtaagaact |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52472742 |
gttcattgtaatttgaagcatcattaatggcaatatcaaattgcttaaaacttcggaattttatcagaatttcatctttgatatttgcatggtaagaact |
52472643 |
T |
|
| Q |
202 |
gccaccgccagcttccttctgtaatagagcagag |
235 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
52472642 |
gccaccgccagcttccttctgtaatagagcagag |
52472609 |
T |
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Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 109
Target Start/End: Original strand, 38793283 - 38793374
Alignment:
| Q |
18 |
ctcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattg |
109 |
Q |
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| T |
38793283 |
ctcacctggctaatccttctccaaaatctttctttctttccggatttctttagcccaattttcttgatgctgttcaggaaataggttcattg |
38793374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 7763371 - 7763454
Alignment:
| Q |
17 |
actcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaata |
100 |
Q |
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||||||||||||||| ||||||||||||| |||| |||| || ||||| |||||||||||||| ||||| ||| |||||||||| |
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| T |
7763371 |
actcacccggcaaatgcttctccaaaatcctccactcttcctggatttttttagcccaattctttggattctgctcaggaaata |
7763454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 112
Target Start/End: Original strand, 5839668 - 5839769
Alignment:
| Q |
11 |
gaaccaactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgt |
110 |
Q |
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|||| |||||||| ||||||| ||||| ||||||||||| ||||||| |||| ||||||||||||| | ||||||||| | |||||| ||||||||| |
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| T |
5839668 |
gaacaaactcacctggcaaattgttctctaaaatcttccactctttctggattcttttagcccaattcctttgatgctgttaatgaaataggttcattgt |
5839767 |
T |
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| Q |
111 |
aa |
112 |
Q |
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|| |
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| T |
5839768 |
aa |
5839769 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 33369717 - 33369633
Alignment:
| Q |
16 |
aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaata |
100 |
Q |
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||||| ||||| |||| || ||||||||||||||| |||| || ||||| |||||||||| ||| ||||| ||| |||||||||| |
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| T |
33369717 |
aactcgcccggaaaatgctcctccaaaatcttccactcttcctggatttttttagcccaactctttggattctgatcaggaaata |
33369633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 5839826 - 5839891
Alignment:
| Q |
129 |
tggcaatatcaaattgcttaaaactttggaattttatcagaatttcatctttgatatttgcatggt |
194 |
Q |
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| T |
5839826 |
tggcaatatcgaatttcttaaaacttccaaatttcctcagaatttcatctttgaaatttgcatggt |
5839891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 100
Target Start/End: Complemental strand, 33363286 - 33363202
Alignment:
| Q |
16 |
aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaata |
100 |
Q |
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|||||||||||||||| || |||||||||| |||| |||| || ||||| |||||||||| ||| |||| ||| | |||||||| |
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| T |
33363286 |
aactcacccggcaaatgctcctccaaaatcctccactcttcctggatttttttagcccaactcttcggattctgcttaggaaata |
33363202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 77
Target Start/End: Complemental strand, 11719548 - 11719487
Alignment:
| Q |
16 |
aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaatt |
77 |
Q |
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| T |
11719548 |
aactaacccggcaaactctcctccaaaatcttccactctttctggattactttagcccaatt |
11719487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 1004551 - 1004459
Alignment:
| Q |
20 |
cacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggatgctgttcaggaaataagttcattgtaa |
112 |
Q |
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||||||||||||||||||||||||| | ||| |||| || |||| | | | |||||| | ||||||||||| ||||||| ||| |||||||| |
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| T |
1004551 |
cacccggcaaatccttctccaaaatttcccagtcttcctggattgcatccgaccaattatttggatgctgttaaggaaatgagtacattgtaa |
1004459 |
T |
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Target: scaffold0648 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0648
Description:
Target: scaffold0648; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Complemental strand, 5529 - 5460
Alignment:
| Q |
16 |
aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggat |
85 |
Q |
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||||||||||||| | ||||||||||||||||| |||| || ||||| |||||||||| ||| ||||| |
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| T |
5529 |
aactcacccggcacgtgattctccaaaatcttccactcttcctggatttttttagcccaactctttggat |
5460 |
T |
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Target: scaffold0274 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0274
Description:
Target: scaffold0274; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 85
Target Start/End: Original strand, 17929 - 17998
Alignment:
| Q |
16 |
aactcacccggcaaatccttctccaaaatcttccattctttcttgatttctttagcccaattctctggat |
85 |
Q |
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||||||||||||| | ||||||||||||||||| |||| || ||||| |||||||||| ||| ||||| |
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| T |
17929 |
aactcacccggcacgtgattctccaaaatcttccactcttcctggatttttttagcccaactctttggat |
17998 |
T |
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