View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_4 (Length: 723)
Name: NF15351_low_4
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 536; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 19 - 714
Target Start/End: Complemental strand, 2591968 - 2591274
Alignment:
| Q |
19 |
caatgttcgtagggtttcatcttcatgtgaaaggttcaa-gccatacgagtacttatgttactactactttcattatcgtttttattttacttcttgttt |
117 |
Q |
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|||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591968 |
caatgttcatagagtttcatcttcatgtgaaaggttcaaagccatacgagtacttatgttactactactttcattatcgtttttattttacttcttgttt |
2591869 |
T |
|
| Q |
118 |
atgtgcacgattgactttcacgaaattatagtatataatttagttggactttgaatgcgtagcttttgtcaaaatcatggtatatatcaccgtgatttag |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||||||||||| ||| ||||||||||||| |
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| T |
2591868 |
atgtgcacgattgactttcacgaaattatagtatataattttgttggattttgaatgcgtggcttttgtcaaaatcatggtgtat--caccgtgatttag |
2591771 |
T |
|
| Q |
218 |
ttaaattcatcatcaattcaaatatgcattatatctattttagtgtggggtgtatgtaattttaataaatggggcaagcatgtttgcctcatctagcaac |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591770 |
ttaaattcatcatcaattcaaatatgcattatatctattttagtgtggggtgtatatcattttaataaatggggcaagcatgtttgcctcatctagcaac |
2591671 |
T |
|
| Q |
318 |
tgtgttcttttaattttaatgaataaatttggccaacttttcatttgatgattgtacttgttatgcttaaatttgttcaatgcatgtattattatttgat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2591670 |
tgtgttcttttaattttaatgaataaatttggccaacttttcatttgatgattgtacttgttatgcttaaatttgttcaatgcatgtattattatttgat |
2591571 |
T |
|
| Q |
418 |
taaaaaattgggtttatttgagctgcggtaattagagcaggtcaa-ttttatggagcagatcannnnnnnngccataacatttgtatgaagtctcctccg |
516 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||||||||||| |
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| T |
2591570 |
taaaaaattgggtttatttgagctgcggtaattagagcaggtcaatttttttggagcagattattttttttgccataacatttgtatgaagtctcctcca |
2591471 |
T |
|
| Q |
517 |
cctttagaattgaataatctttattacgaaacatgtggtacacaaaaattgggttctcctctttcaacaannnnnnnnnaatacgcatgaacaagattca |
616 |
Q |
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||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| |||| | |||||||||||||||||||| |
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| T |
2591470 |
cctttagaattgaataatctttattacgaaataagtggtacataaaaattgggttctcctcttccaac-agattttttttatacgcatgaacaagattca |
2591372 |
T |
|
| Q |
617 |
aactcttgaccacatgcttaaggagatcaactctgttaccacttaaaccaatctataattggttgagtagatcatgttaattacaaaattagtataat |
714 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2591371 |
aactcttgaccacatgcttaaggagatcaactctattaccacttgaaccaatctataattggttgagtagatcatgttaattacaaaattagtgtaat |
2591274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 112; E-Value: 3e-56
Query Start/End: Original strand, 40 - 378
Target Start/End: Complemental strand, 2599707 - 2599352
Alignment:
| Q |
40 |
ttcatgtgaaaggttcaagccatacgagtacttatgttactactactttcattatcgtttttattttacttcttgtttatgtgcacgattga-------- |
131 |
Q |
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||||||||||||||||||||||||| | ||||||||||||||||||||||||| | ||||||||||||||| |||||| ||||||||||||| |
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| T |
2599707 |
ttcatgtgaaaggttcaagccataccaatacttatgttactactactttcattgttgtttttattttacttattgtttctgtgcacgattgaaattacac |
2599608 |
T |
|
| Q |
132 |
---ctttcacgaaattatagtata------taatttagttggactttgaatgcgtagcttttgtcaaaatcatggta-tatatcaccgtgatttagttaa |
221 |
Q |
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||| || |||||||||||||| |||||| ||| || |||| || || ||||||||||||||| ||| | | |||| ||| ||| | ||| |
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| T |
2599607 |
cgacttgcatgaaattatagtataatactataattttgtttgagtttgggtgtgtgacttttgtcaaaatcacggtggtgtgtcactgtgtttttgctaa |
2599508 |
T |
|
| Q |
222 |
attcatcatcaattcaaatatgcattatatctattttagtgtggggtgtatgtaattttaataaatggggcaagcatgtttgcctcatctagcaactgtg |
321 |
Q |
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|||||||||| ||||||||||||| |||||||||||| ||||||| | | ||| || | ||||||| ||| |||| ||||||||||||| || |||| || |
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| T |
2599507 |
attcatcatcgattcaaatatgcactatatctattttggtgtgggatatgtgtcatgtcaataaatagggtaagcctgtttgcctcatcgagtaactttg |
2599408 |
T |
|
| Q |
322 |
ttcttttaattttaatgaataaatttggccaacttttcatttgatgattgtacttgt |
378 |
Q |
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|||||||||||||||| |||||||||||| ||| |||| |||||||||||||||||| |
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|
| T |
2599407 |
ttcttttaattttaataaataaatttggcaaac-tttcgtttgatgattgtacttgt |
2599352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 40 - 402
Target Start/End: Complemental strand, 2578204 - 2577838
Alignment:
| Q |
40 |
ttcatgtgaaaggttcaagccatacgagtacttatgttactactactttcattatcgtttttattttacttcttgtttatgtgcacgattga-------- |
131 |
Q |
| |
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||||||||||||||||||||||||| | |||||||||||| | |||||||||||||||||||||||||||| |||||||||| | |||||| |
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|
| T |
2578204 |
ttcatgtgaaaggttcaagccataccaatacttatgttacaa-tactttcattatcgtttttattttacttaatgtttatgtgtatgattgaaattacgg |
2578106 |
T |
|
| Q |
132 |
---ctttcacgaaattatagta----tataatttagttggactttgaatgcgtagcttttgtcaaaatcat--ggtatatatcaccgtgatttagttaaa |
222 |
Q |
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|||| |||||||||||||| |||||||| |||| | ||| | | || | |||||||||||||| ||| | || ||||||| |||||| |
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| T |
2578105 |
tggctttaacgaaattatagtaatactataattttgttgaagtttcac-gagttgtttttgtcaaaatcacacggtgt----cattgtgattttgttaaa |
2578011 |
T |
|
| Q |
223 |
ttcatcatcaattcaaatatgcattatatctattttagtgtggggtgtatgtaattttaataaatggggcaagcatgtttgcctcatctagcaactgtgt |
322 |
Q |
| |
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|||| | ||||||||||| |||| ||||||| | ||||| | ||| || |||||||||||||||| |||||||||||||||||||||||| | ||| |
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| T |
2578010 |
ttcaccctcaattcaaatctgcactatatct----tggtgtgagatgt--gttattttaataaatggggtaagcatgtttgcctcatctagcaattttgt |
2577917 |
T |
|
| Q |
323 |
tcttttaattttaatgaataaatttggccaacttttcatttgatgattgtacttgttatgcttaaatttgttcaatgcat |
402 |
Q |
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| T |
2577916 |
tgttttaattttaataaataaatttggcgaac-tttcatttgattattggacttgttatacttaaatttgtgcaatgcat |
2577838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 285 - 410
Target Start/End: Complemental strand, 2607969 - 2607849
Alignment:
| Q |
285 |
aatggggcaagcatgtttgcctcatctagcaactgtgttcttttaattttaatgaataaatttggccaacttttcatttgatgattgtacttgttatgct |
384 |
Q |
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||||||| |||| |||||||||||| |||||||| |||||||||||| || |||||||||||| ||| |||||| |||||||||| ||||| || || |
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| T |
2607969 |
aatggggtaagcctgtttgcctcatttagcaactttgttcttttaatctt----aataaatttggcgaac-tttcatgtgatgattgtgcttgtcatact |
2607875 |
T |
|
| Q |
385 |
taaatttgttcaatgcatgtattatt |
410 |
Q |
| |
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||||||||| ||||||||| |||||| |
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|
| T |
2607874 |
taaatttgtgcaatgcatggattatt |
2607849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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