View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_40 (Length: 238)
Name: NF15351_low_40
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_40 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 11 - 238
Target Start/End: Original strand, 1842290 - 1842517
Alignment:
| Q |
11 |
caaaggaaagagggtgccagacaaaagcaactctaatattaccactcactgttattggtaagcaactaagcatgccctattgattttgtttaaattcann |
110 |
Q |
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| T |
1842290 |
caaaggaaagagggtgccagacaaaagcaactccaatattaccactcactgttattggtaagcaactaagcatgccctattgattttgtttaaattcatt |
1842389 |
T |
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| Q |
111 |
nnnnnnnnnnnnnnnnnnataattcttgcattagcatgttcatttactatgctattgatataaattaatgcaggagtaggagcaacacttattcttcttt |
210 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1842390 |
tttttcctcactttttttataattcttacattagcatgttcatttactatgctattgatataaattaatgcaggagtaggagcaacgcttattcttcttt |
1842489 |
T |
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| Q |
211 |
tggttgggacattctcgtacttaatata |
238 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
1842490 |
tggttgggacattctcgtacttaatata |
1842517 |
T |
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