View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_5 (Length: 623)
Name: NF15351_low_5
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 195 - 604
Target Start/End: Complemental strand, 15878509 - 15878100
Alignment:
| Q |
195 |
aacatttcattattcatccaactataaagtattctctaaaagaaatcttactataaagtatatcatcatgctttatttacatcccagaaacgatataact |
294 |
Q |
| |
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|||||| |||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15878509 |
aacattgcattattcatcctactataaagtatcctctaaaagaaatcttactataaagtatatcatcatgctttatttacatcccagaaacgatataact |
15878410 |
T |
|
| Q |
295 |
aatttcacactagatctttctccatttccattttacttgcatttcttgaacctcacaacattcgaaatctcctttcatnnnnnnnnnnnttatagaatct |
394 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||| ||||||||||| |
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| T |
15878409 |
aatttcacactagatctttctccatttccattttacttgcaattcttggacctcacaattttcgaaatctcctttcataaaaaaaaaacttatagaatct |
15878310 |
T |
|
| Q |
395 |
cttttgttgcattatcagcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgtcaaagtttagtgactctattgtaaaaggt |
494 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
15878309 |
cttttgttgcataatcagcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgttgaagtttagtgactctattgtaaaaggt |
15878210 |
T |
|
| Q |
495 |
actatagctaatgtattagtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctgcatgataata |
594 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
15878209 |
actatagctaatgtatttgtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctgcatgatagta |
15878110 |
T |
|
| Q |
595 |
cttgttttaa |
604 |
Q |
| |
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|||||||||| |
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| T |
15878109 |
cttgttttaa |
15878100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 412 - 606
Target Start/End: Original strand, 15908497 - 15908691
Alignment:
| Q |
412 |
gcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgtcaaagtttagtgactctattgtaaaaggtactatagctaatgtatt |
511 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
15908497 |
gcatttcttcctttgttacctaatactagtaatttcactgctgcgttggagtgtcaaagtttagggactctattgtaaaaggtactatagctaatgtatt |
15908596 |
T |
|
| Q |
512 |
agtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctgcatgataatacttgttttaact |
606 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
15908597 |
tgtttctatcatttttattatttgttcttcaagtgttgatatatccgatttaaacctagtttctttttctctacatgatagtacttgttttaact |
15908691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 157; E-Value: 4e-83
Query Start/End: Original strand, 15 - 175
Target Start/End: Complemental strand, 15878773 - 15878613
Alignment:
| Q |
15 |
gaactaagaggcattggattcttaatgcatgttaagttaaaggtgaccaacataatttaatgtgacaaatcaaagtataatttaatgtgataaggagtac |
114 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15878773 |
gaactaagaggcattggattcttaatgcatgttaagttaaaggtgaccaacataatttaatgtgacaaatcaaagtataatttaatgtgataaggagtac |
15878674 |
T |
|
| Q |
115 |
tcctaacaaagttatttgacagatacaatttaaagtagaatcatatacgatgtgtggatca |
175 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15878673 |
ccctaacaaagttatttgacagatacaatttaaagtagaatcatatacgatgtgtggatca |
15878613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 412 - 606
Target Start/End: Original strand, 15891285 - 15891476
Alignment:
| Q |
412 |
gcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgtcaaagtttagtgactctattgtaaaaggtactatagctaatgtatt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||| ||| ||||||| |||||||||||| |
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| T |
15891285 |
gcatttcttcctttgttacctagtactagtaatttcactgctgtgttggagtgtcgaagtttagtgact--attgcaaa-ggtactaaagctaatgtatt |
15891381 |
T |
|
| Q |
512 |
agtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctgcatgataatacttgttttaact |
606 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
15891382 |
tgtttctatcatttttattatttgttcttcaagtgttgatatatgcgatttcaacctagtttctttttctctacatgatagtacttgttttaact |
15891476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 121; E-Value: 1e-61
Query Start/End: Original strand, 195 - 370
Target Start/End: Original strand, 15908285 - 15908460
Alignment:
| Q |
195 |
aacatttcattattcatccaactataaagtattctctaaaagaaatcttactataaagtatatcatcatgctttattt-acatcccagaaacgatataac |
293 |
Q |
| |
|
|||||| |||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
15908285 |
aacattgcattattcatcctactataatgtatcctctaaaagaaatcttactataaagtatatcatcatgctttattttacatcccagaaacgatataac |
15908384 |
T |
|
| Q |
294 |
taatttcacactagatctttctccatttccattttacttgcatttcttgaacctcacaacattcgaaatctcctttc |
370 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||| |||||| ||||||| || ||| ||||||| |||| |
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| T |
15908385 |
taagttcacactagatctttctccatttccattttacttgcaattcttg-acctcaccactttcaaaatctcttttc |
15908460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 195 - 370
Target Start/End: Original strand, 15891072 - 15891247
Alignment:
| Q |
195 |
aacatttcattattcatccaactataaagtattctctaaaagaaatcttactataaagtatatcatcatgctttattt-acatcccagaaacgatataac |
293 |
Q |
| |
|
|||||| |||||||||||| |||||||||||| |||| |||||| ||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
15891072 |
aacattgcattattcatcctactataaagtatcctctcaaagaa-tcttactataaagtatatcatcatgctttgttttacatcccagaaacgatataac |
15891170 |
T |
|
| Q |
294 |
taatttcacactagatctttctccatttccattttacttgcatttcttgaacctcacaacattcgaaatctcctttc |
370 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||| ||||||| |||| |
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|
| T |
15891171 |
taatttcaccctagatctttctccatttccattttacttacaattcttgaacctcacaactttcaaaatctcttttc |
15891247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 93 - 175
Target Start/End: Original strand, 15908065 - 15908148
Alignment:
| Q |
93 |
aatttaatgtgataaggagtactcctaacaaagttatttgacagatacaatttaaagtagaa-tcatatacgatgtgtggatca |
175 |
Q |
| |
|
||||||||||||||||| |||| | |||||||||||||||| |||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
15908065 |
aatttaatgtgataaggtgtacccttaacaaagttatttgatagatacaatttaaagtagaattcatatacaatgtgtggatca |
15908148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 412 - 534
Target Start/End: Original strand, 15890392 - 15890516
Alignment:
| Q |
412 |
gcatttcttcctttgttacctagtactagtaatttcactgctgcgttggagtgtcaaagtttagtgactctat---tgtaaaaggtactatagctaatgt |
508 |
Q |
| |
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|||||| |||||||||||||| ||||||||| |||||||||||||||||||||| ||||||| |||| ||| || |||||||||| || ||||| |
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| T |
15890392 |
gcattttttcctttgttacctcgtactagta-tttcactgctgcgttggagtgttgaagtttaacgactatatatatggtaaaggtactaaagtcaatgt |
15890490 |
T |
|
| Q |
509 |
attagtttctatcatttttattattt |
534 |
Q |
| |
|
| | |||||||||||||||||||||| |
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|
| T |
15890491 |
aattgtttctatcatttttattattt |
15890516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 168 - 204
Target Start/End: Complemental strand, 15878560 - 15878524
Alignment:
| Q |
168 |
gtggatcagaaactaggtatgaataaaaacatttcat |
204 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||| |
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|
| T |
15878560 |
gtggattagaaactaggtatgaataaaaacatttcat |
15878524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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