View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15351_low_6 (Length: 557)
Name: NF15351_low_6
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_6 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 503; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 503; E-Value: 0
Query Start/End: Original strand, 15 - 537
Target Start/End: Complemental strand, 7184645 - 7184123
Alignment:
| Q |
15 |
agcataggtcaacataccttgtgctgaaacattattaatcatgtgcgaattgcattaaccatttaaaagttgttgaatttaggtgtcctaaattgatgct |
114 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
7184645 |
agcacaggtcaacataccttgtgctgaaacattattaatcatgtgcgaattgcattaaccatttaaaagttgttgaatttaggtttcctaaattgatgcc |
7184546 |
T |
|
| Q |
115 |
caaataataattttgtatagtataatcagtaagaatatatgttatcgcaatgatcgtcgttgtcggctgaacatagttgatgtattcttaatgaaatgat |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7184545 |
caaataataattttgtatagtataatcagtaagaatatatgttatcgcaatgatcgtcgttgtcggctgaacatagttgatgtattcttaatgaaatgat |
7184446 |
T |
|
| Q |
215 |
gtgttattagctgcatatttttgttctggctctaaatatttcggttttactgttagatttacattgataatggaggagagttgaatggtattcctcatat |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7184445 |
gtgttattagctgcatatttttgttctggctctaaatatttcggttttactgttagatttacattgataatggaggagagttgaatggtattcctcatat |
7184346 |
T |
|
| Q |
315 |
acaaactcttagagaatttcctagggaggagctatttggaaaagtcgtcatggttagatttgattctaacatattactcaagcaagagtgtaaccagaag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7184345 |
acaaactcttagagaatttcctagggaggagctatttggaaaagtcgtcatggttagatttgattctaacatattactcaagcaagagtgtaaccagaag |
7184246 |
T |
|
| Q |
415 |
aatcaatcagatttcaatgcactgtttacgattaaatatttacatgaagccggagcaaaggtcatcctggtcagtgattggaaaacaaatacttcagaac |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7184245 |
aatcaatcagatttcaatgcactgtttacgattaaatatttacatgaagccggagcaaaggtcatcctggtcagtgattggaaaacaaatacttcagaac |
7184146 |
T |
|
| Q |
515 |
tttgcaaaaaatcggttgcaggt |
537 |
Q |
| |
|
|| ||| |||||||||||||||| |
|
|
| T |
7184145 |
ttcgcacaaaatcggttgcaggt |
7184123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 134
Target Start/End: Complemental strand, 10650726 - 10650661
Alignment:
| Q |
69 |
ttaaccatttaaaagttgttgaatttaggtgtcctaaattgatgctcaaataataattttgtatag |
134 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||| ||||||||| |||||||| | ||||| |||| |
|
|
| T |
10650726 |
ttaaccatttaaatgttgtcgaatttaagtgtcaaaaattgatgttcaaataacatttttgaatag |
10650661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University