View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15351_low_7 (Length: 526)
Name: NF15351_low_7
Description: NF15351
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15351_low_7 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 123 - 526
Target Start/End: Original strand, 26130838 - 26131242
Alignment:
| Q |
123 |
tgtgcaggctcaacacttgccttatccacatgctccaaccaagaaatcaaagagcggcaatatgcaaggttccttgatattttcaagagattgaaaataa |
222 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | |
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| T |
26130838 |
tgtgcaggctcaacacttgccatatccacatgctccaaccaagaaagcaaagagcggaaatatgcaaggttccttgatattttcaagagattgaaaatca |
26130937 |
T |
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| Q |
223 |
atattccattctcggaagccttggagaaaattccgacgtatgcttatttctggaaggaaatcctttataagaagaggaagtacaatgataaagtaacaat |
322 |
Q |
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| T |
26130938 |
atattccattctcggaagccttggagaaaattctgacgtatgcttagttctggaaggaaatcctttataagaagaggaagtacaatgataaagtaacaat |
26131037 |
T |
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| Q |
323 |
tcaacttaatgcaaattgtagtgcaatcatccagataacgttgccaaagaaagagaaagattcagagagacttacattaccggtgtccataggcaatgtt |
422 |
Q |
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| T |
26131038 |
tcaacttaatgcaaattgtagtgcaatcatccagataacgttgccaaagaaagagaaagattcggagaggcttacattaccggtggccataggcaatgtt |
26131137 |
T |
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| Q |
423 |
aatgtcggtaaagcactcattggtttaggttcaagcatcaacctaatccca-tgtcagttgtcaaaagggttggtgacttggatatgaagaatacaagga |
521 |
Q |
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| T |
26131138 |
aatgtcggcaaagcactcattgatttaggttcaagcatcaacctaatcccattgtcagttgtcaaaagggttggtgacttggatatgaagaatacaagga |
26131237 |
T |
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| Q |
522 |
tgact |
526 |
Q |
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| T |
26131238 |
tgact |
26131242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 132 - 355
Target Start/End: Original strand, 177393 - 177617
Alignment:
| Q |
132 |
tcaacacttgccttatccacatgctccaaccaagaa--atcaaagagcggcaatatgcaaggttccttgatattttcaagagattgaaaataaatattcc |
229 |
Q |
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||||||||| ||||| |||||||||||| | ||||| || ||||| |||||| |||||||| ||||| | ||||||| |||| |||| | ||||| |
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| T |
177393 |
tcaacacttaccttacccacatgctccatcaaagaaggat-aaagaaaagcaatacgcaaggtttcttgagctcttcaagaaattgcaaattgacattcc |
177491 |
T |
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| Q |
230 |
attctcggaagccttggagaaaattccgacgtatgcttatttctggaaggaaatcctttataagaagagga-agtacaatgataaagtaacaattcaact |
328 |
Q |
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| T |
177492 |
attctcggaagccttggagcaaatgccggcgtatgctaagttcatgaaagacatgctttccaagaagaggagaattc-atgatgaagaaaccatccaact |
177590 |
T |
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| Q |
329 |
taatgcaaattgtagtgcaatcatcca |
355 |
Q |
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| T |
177591 |
tgatgctaattgtagtgctatcatcca |
177617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 474
Target Start/End: Original strand, 17786870 - 17786978
Alignment:
| Q |
366 |
ccaaagaaagagaaagattcagagagacttacattaccggtgtccataggcaatgttaatgtcggtaaagcactcattggtttaggttcaagcatcaacc |
465 |
Q |
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| T |
17786870 |
ccaaagaaagagaaagatccgggaagagttacattaccgatggcaattggtaacgtcaatgttggtaagacactcattgatttaggctcaagcatcaacc |
17786969 |
T |
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| Q |
466 |
taatcccat |
474 |
Q |
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| T |
17786970 |
ttatcccat |
17786978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 511
Target Start/End: Complemental strand, 17788736 - 17788619
Alignment:
| Q |
394 |
ttacattaccggtgtccataggcaatgttaatgtcggtaaagcactcattggtttaggttcaagcatcaacctaatcccat-gtcagttgtcaaaagggt |
492 |
Q |
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|||||||||||||| | || || || || ||||| ||||| |||||| ||| |||||| |||||||||||||| ||||||| ||||||||||| |||| |
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| T |
17788736 |
ttacattaccggtggcaattggtaacgtcaatgttggtaaggcactc-ttgatttaggctcaagcatcaaccttatcccatattcagttgtcaagcgggt |
17788638 |
T |
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| Q |
493 |
tggtgacttggatatgaag |
511 |
Q |
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| T |
17788637 |
tggtggcttagacatgaag |
17788619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 317 - 383
Target Start/End: Original strand, 7064887 - 7064953
Alignment:
| Q |
317 |
aacaattcaacttaatgcaaattgtagtgcaatcatccagataacgttgccaaagaaagagaaagat |
383 |
Q |
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| T |
7064887 |
aacaattcaactagatgcaaattgtagcgcaatcatccaaagacgtttgccaaagaaagaaaaagat |
7064953 |
T |
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