View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15352_high_11 (Length: 340)

Name: NF15352_high_11
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15352_high_11
NF15352_high_11
[»] chr1 (6 HSPs)
chr1 (211-302)||(1831353-1831444)
chr1 (290-329)||(1831471-1831510)
chr1 (212-251)||(17492634-17492673)
chr1 (216-252)||(9450333-9450369)
chr1 (217-251)||(5759966-5760000)
chr1 (211-251)||(1831193-1831233)
[»] chr5 (5 HSPs)
chr5 (216-251)||(23223856-23223891)
chr5 (212-251)||(34397224-34397263)
chr5 (211-249)||(23294352-23294390)
chr5 (214-251)||(13401275-13401312)
chr5 (150-191)||(23294345-23294386)
[»] chr2 (2 HSPs)
chr2 (212-251)||(42866663-42866702)
chr2 (216-250)||(26632433-26632467)
[»] chr7 (1 HSPs)
chr7 (216-250)||(33342948-33342982)
[»] chr3 (2 HSPs)
chr3 (217-251)||(25258198-25258232)
chr3 (217-250)||(45012857-45012890)


Alignment Details
Target: chr1 (Bit Score: 64; Significance: 6e-28; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 211 - 302
Target Start/End: Original strand, 1831353 - 1831444
Alignment:
Q  211 gtagtgaatgagcaatttcataagtgagaagagtaattttccaaaataaatagggcatggttacttgcttaccaagggtagtaggtaatact 302  Q
    |||||||||| ||||||||||| ||||||||||||||||||||||||||||||| |||| ||| |||||||||||||  |||||||||||||    
T  1831353 gtagtgaatgggcaatttcataggtgagaagagtaattttccaaaataaataggtcatgcttaattgcttaccaaggacagtaggtaatact 1831444  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Original strand, 1831471 - 1831510
Alignment:
Q  290 agtaggtaatactattgaatttttgcaccctccttccttt 329  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  1831471 agtaggtaatactattgaatttttgcaccctccttccttt 1831510  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 17492673 - 17492634
Alignment:
Q  212 tagtgaatgagcaatttcataagtgagaagagtaattttc 251  Q
    ||||||||||| ||||||||||||||||||||||||||||    
T  17492673 tagtgaatgagaaatttcataagtgagaagagtaattttc 17492634  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 252
Target Start/End: Original strand, 9450333 - 9450369
Alignment:
Q  216 gaatgagcaatttcataagtgagaagagtaattttcc 252  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9450333 gaatgagcaatttcataagtgagaagagcaattttcc 9450369  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 251
Target Start/End: Complemental strand, 5760000 - 5759966
Alignment:
Q  217 aatgagcaatttcataagtgagaagagtaattttc 251  Q
    |||||| ||||||||||||||||||||||||||||    
T  5760000 aatgagtaatttcataagtgagaagagtaattttc 5759966  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 251
Target Start/End: Complemental strand, 1831233 - 1831193
Alignment:
Q  211 gtagtgaatgagcaatttcataagtgagaagagtaattttc 251  Q
    |||| |||||||||||||| |||||||||| ||||||||||    
T  1831233 gtagcgaatgagcaatttcttaagtgagaaaagtaattttc 1831193  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 251
Target Start/End: Complemental strand, 23223891 - 23223856
Alignment:
Q  216 gaatgagcaatttcataagtgagaagagtaattttc 251  Q
    |||||||||||||||||||||||||||||| |||||    
T  23223891 gaatgagcaatttcataagtgagaagagtatttttc 23223856  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 251
Target Start/End: Original strand, 34397224 - 34397263
Alignment:
Q  212 tagtgaatgagcaatttcataagtgagaagagtaattttc 251  Q
    |||||||||| |||||||||| ||||||||||||||||||    
T  34397224 tagtgaatgaacaatttcatatgtgagaagagtaattttc 34397263  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 249
Target Start/End: Original strand, 23294352 - 23294390
Alignment:
Q  211 gtagtgaatgagcaatttcataagtgagaagagtaattt 249  Q
    ||||||||||| |||||| ||||||||||||||||||||    
T  23294352 gtagtgaatgatcaattttataagtgagaagagtaattt 23294390  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Complemental strand, 13401312 - 13401275
Alignment:
Q  214 gtgaatgagcaatttcataagtgagaagagtaattttc 251  Q
    |||||||||||||||||||||| ||||||| |||||||    
T  13401312 gtgaatgagcaatttcataagttagaagagcaattttc 13401275  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 23294386 - 23294345
Alignment:
Q  150 tacttttctcacttatgaaattgttcattcactacatcaacg 191  Q
    |||| ||||||||||| |||||| ||||||||||||||||||    
T  23294386 tactcttctcacttataaaattgatcattcactacatcaacg 23294345  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 212 - 251
Target Start/End: Complemental strand, 42866702 - 42866663
Alignment:
Q  212 tagtgaatgagcaatttcataagtgagaagagtaattttc 251  Q
    ||||||||||||||||||||||  ||||||||||||||||    
T  42866702 tagtgaatgagcaatttcataaacgagaagagtaattttc 42866663  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 26632433 - 26632467
Alignment:
Q  216 gaatgagcaatttcataagtgagaagagtaatttt 250  Q
    |||||| ||||||||||||||||||||||||||||    
T  26632433 gaatgaacaatttcataagtgagaagagtaatttt 26632467  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 250
Target Start/End: Original strand, 33342948 - 33342982
Alignment:
Q  216 gaatgagcaatttcataagtgagaagagtaatttt 250  Q
    |||||||||||| ||||||||||||||||||||||    
T  33342948 gaatgagcaattccataagtgagaagagtaatttt 33342982  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 251
Target Start/End: Original strand, 25258198 - 25258232
Alignment:
Q  217 aatgagcaatttcataagtgagaagagtaattttc 251  Q
    ||||| |||||||||||||||||||||||||||||    
T  25258198 aatgaacaatttcataagtgagaagagtaattttc 25258232  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 250
Target Start/End: Original strand, 45012857 - 45012890
Alignment:
Q  217 aatgagcaatttcataagtgagaagagtaatttt 250  Q
    |||||||||||||| |||||||||||||||||||    
T  45012857 aatgagcaatttcacaagtgagaagagtaatttt 45012890  T

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