View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15352_high_17 (Length: 273)
Name: NF15352_high_17
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_high_17 |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 11 - 260
Target Start/End: Original strand, 5350987 - 5351236
Alignment:
| Q |
11 |
cacagatctaaatatacattaattatttcaaccgtaccattcatttgcatttatatttgtataaatacccattcccttctcttccaaatcacaactcgat |
110 |
Q |
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| T |
5350987 |
cacagatctaaatatacattaattatttcaaccgtaccattcatttgcatttatatttgtataaatacccattcccttctcttccaaatcacaactcgat |
5351086 |
T |
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| Q |
111 |
tcacaaatcacattacattttacatttacaacatttgccacattgattaacaagtaacatggctggagcaattaaggttgttgctatctctggttctatt |
210 |
Q |
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| T |
5351087 |
tcacaaatcacattacattttacatttacaacatttgccacattgattaacaaataacatggctggagcaattaaggttgttgctatctctggttctctt |
5351186 |
T |
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| Q |
211 |
cgaaaagcttcttataacaccggtctcatccgttctggttggttcctact |
260 |
Q |
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| T |
5351187 |
cgaaaagcttcttataacaccggtctcatccgttctggttggttcctact |
5351236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 96 - 260
Target Start/End: Original strand, 5343417 - 5343574
Alignment:
| Q |
96 |
aaatcacaactcgattcacaaatcacattacattttacatttacaacatttgccacattgattaacaagtaacatggctggagcaattaaggttgttgct |
195 |
Q |
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| T |
5343417 |
aaatcacaactcaattcacaaatcacatcacatat-------acaacatttgccacattgattcacaaaaaacatggctgggataattaaggttgctgca |
5343509 |
T |
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| Q |
196 |
atctctggttctattcgaaaagcttcttataacaccggtctcatccgttctggttggttcctact |
260 |
Q |
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| T |
5343510 |
ctttctggttctctccgaaaagcttcttacaacactggtctcatccgttctggttagttcctact |
5343574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 223
Target Start/End: Complemental strand, 5326259 - 5326217
Alignment:
| Q |
181 |
attaaggttgttgctatctctggttctattcgaaaagcttctt |
223 |
Q |
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| T |
5326259 |
attaagattgttgctctctctggttctcttcgaaaagcttctt |
5326217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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