View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15352_low_1 (Length: 949)
Name: NF15352_low_1
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_low_1 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 882; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 882; E-Value: 0
Query Start/End: Original strand, 7 - 949
Target Start/End: Original strand, 47072109 - 47073050
Alignment:
| Q |
7 |
gagatgaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcattggattcttactttcaataattaatggtac |
106 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
47072109 |
gagaagaacagatgaaggtggtagaagtagaattatttgtaactgataccctattatgaatatgaagcaatggattcttactttcaataattaatggtac |
47072208 |
T |
|
| Q |
107 |
tgggtacatcaattatatacattttggaagaaaggaagatgaactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072209 |
tgggtacatcaattatatacattttggaagaaaggaagatcaacttgaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaataga |
47072308 |
T |
|
| Q |
207 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgca |
306 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
47072309 |
aagagcataaactactactatctaactttcataatcaagatgctacatatggcagagattcatgcttcaatttacagttcatttgaatgaaaaaac-gca |
47072407 |
T |
|
| Q |
307 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttgg |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| |
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| T |
47072408 |
tttgcgacctaaaatttcgtccgcatccaacacaaataaaatgtaccacttaatatctaaggattgttgatcaagtatctatacagagaagaacggttgg |
47072507 |
T |
|
| Q |
407 |
ctgtctctaattgtaatatctatagaatagtggatggatgagagaactgggaaacaagtggtttgatatctctacttctcatgaaagtcaaaaattgatt |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072508 |
ctgtctctaattgtaatatctatagaatagtggatggatgagggaactgggaaacaagtggtttgatatctctacttctcatgaaagtcaaaaattgatt |
47072607 |
T |
|
| Q |
507 |
aggtagttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaaacacaataatggggttcaattaaatgaataaaaattgttagcaaaaa |
606 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072608 |
aggtagttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaaacacaataatggggttcaattaaatgaataaaaattgttagcaaaaa |
47072707 |
T |
|
| Q |
607 |
tataagagtaataaatattatatttgtccacctgctaacttaatggtacatggattggtgtcaataaaacaaaagacacaatagttataagaattgaaag |
706 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072708 |
tataagagtaataaatattatatttgtccacctgctaacttaatggtacatggattggtgtcaataaaacaaaagacacaatagttataagaattgaaag |
47072807 |
T |
|
| Q |
707 |
actattacacaagttaactagagaagcaactagtacttactttgtatttctctcatggggacaaactgcactatatctcgtgtagctattcgaccggtag |
806 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072808 |
actattacacaagttaactagagaagcaactagtacttactttgtatttctctcatggggacaaactgcactatatctcgtgtagctattcgaccggtag |
47072907 |
T |
|
| Q |
807 |
aactttctaagcgacatccattatcagcatccagtacctgtaataattaaccttagtacttgttattctctcagataaaaaagcatacttagcaggagcc |
906 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47072908 |
aactttctaagcgacatccattatcagcatccagtacctgtaataattaaccttagtacttgttattctctcagataaaaaagcatacttagcaggagcc |
47073007 |
T |
|
| Q |
907 |
atgttaaggaaaagaaacttaggcaaggatataagtagacctc |
949 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
47073008 |
atgttaaggaaaagaaacttaggcaaggatataagtaaacctc |
47073050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 48 - 424
Target Start/End: Original strand, 33598227 - 33598601
Alignment:
| Q |
48 |
actgataccctattatgaatatgaagcattggattcttactttcaataattaatggtactgggtacatcaattatatacattttggaagaaaggaagatg |
147 |
Q |
| |
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|||||||||||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33598227 |
actgataccctattatgaatatgaagcaacgctttcttactttcaataatgaatggtactgggtacatcaattatatacattttggaagaaaggaagatc |
33598326 |
T |
|
| Q |
148 |
aactggaaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagat |
247 |
Q |
| |
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|||| ||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
33598327 |
aacttgaaactgaatcaaataacacaatgtaaactaaaagttaattaacatgaaatagaaagggcataaactactactatctaactttcataatcaagat |
33598426 |
T |
|
| Q |
248 |
gctacatatggcagagattcatgcttcaatttacagttcatttgaatgnnnnnnntgcatttgcgacctaaaatttcgtccgcatccaacacaaataaaa |
347 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||| |
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| T |
33598427 |
gctacatatggcagagattcatgcttcaatctacagttcatttgaatgaaaaacgt--atttgagacctaaaatttcgtccgcatccaacacaaataaaa |
33598524 |
T |
|
| Q |
348 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaata |
424 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33598525 |
tgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaata |
33598601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 7e-30
Query Start/End: Original strand, 737 - 856
Target Start/End: Original strand, 47054826 - 47054945
Alignment:
| Q |
737 |
tagtacttactttgtatttctctcatggggacaaactgcactatatctcgtgtagctattcgaccggtagaactttctaagcgacatccattatcagcat |
836 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| || ||||||||||||| ||||| ||||| ||||||||| ||||||| ||||||||||| || |
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|
| T |
47054826 |
tagtacttactttgtacttctctcatggggacaaattgtactatatctcgtgcagctacacgaccaatagaactttttaagcgaggtccattatcagtat |
47054925 |
T |
|
| Q |
837 |
ccagtacctgtaataattaa |
856 |
Q |
| |
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|||||||||| ||||||||| |
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| T |
47054926 |
ccagtacctgaaataattaa |
47054945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 462 - 570
Target Start/End: Original strand, 47054492 - 47054599
Alignment:
| Q |
462 |
aagtggtttgatatctctacttctcatgaaagtcaaaaattgattaggtagttcctccaaaagagcttgcacaacagagatttgtccacctgtcaaaaac |
561 |
Q |
| |
|
|||||||||||||| |||||||| |||||||| |||||| |||| ||||| ||| |||||||||||||||||||||||||| ||||| ||| ||||||| |
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|
| T |
47054492 |
aagtggtttgatatttctacttcgcatgaaagacaaaaactgatcaggtaattcttccaaaagagcttgcacaacagagatctgtccttctg-caaaaac |
47054590 |
T |
|
| Q |
562 |
acaataatg |
570 |
Q |
| |
|
|||| |||| |
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|
| T |
47054591 |
acaagaatg |
47054599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 5e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 344 - 602
Target Start/End: Complemental strand, 18232721 - 18232465
Alignment:
| Q |
344 |
aaaatgtaccacttaatatctaaggattgtggatcaagtatctatacagagaagaaaggttggctgtctctaattgtaatatctatagaatagtggatgg |
443 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |||||||| |||||| |||||||| || ||| |||||||| |||||| |||||| | || |
|
|
| T |
18232721 |
aaaatgtaccacttaaaatctaaggattgtggatcaactatctatagagagaaaaaaggttgactatct--aattgtaaaatctattgaatagagcgtgc |
18232624 |
T |
|
| Q |
444 |
atgagagaactgggaaacaagtggtttgatatctctacttctcatgaaagtcaaaaattgattaggtagttcctccaaaagagcttgcacaacagagatt |
543 |
Q |
| |
|
||||| ||| || ||||| ||||||||||||||||||||||||||||||| || ||||||| ||||||||||||| |||||||||||||||||||||||| |
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| T |
18232623 |
atgagggaaatgcgaaacgagtggtttgatatctctacttctcatgaaagccagaaattgactaggtagttcctctaaaagagcttgcacaacagagatt |
18232524 |
T |
|
| Q |
544 |
tgtccacctgtcaaaaacacaataatggggttcaattaaatgaataaaaattgttagca |
602 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||| |||| |||||||||| |
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|
| T |
18232523 |
tgtccacctgccaaaaatacaataatggggttcaattaaatgagtaaagattgttagca |
18232465 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 643 - 949
Target Start/End: Complemental strand, 18232372 - 18232067
Alignment:
| Q |
643 |
aacttaatggtacatggattggtgtcaataaaacaaaagacacaatagttataagaattgaaagactattacacaagttaa-ctagagaagcaactagta |
741 |
Q |
| |
|
||||| |||||||||| ||| |||||||||||||||| ||| ||| ||||||||||||||||| |||| || |||||| || |||||||||| ||||||| |
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|
| T |
18232372 |
aacttgatggtacatgaatttgtgtcaataaaacaaa-gactcaaaagttataagaattgaaaaactacta-acaagtcaaactagagaagcgactagta |
18232275 |
T |
|
| Q |
742 |
cttactttgtatttctctcatggggacaaactgcactatatctcgtgtagctattcgaccggtagaactttctaagcgacatccattatcagcatccagt |
841 |
Q |
| |
|
||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||| || |||| |||||||||||||||||| |
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|
| T |
18232274 |
cttactttgtacttctctcatggggacaaattgcactatatctcgtgtagctagacgaccagtagaacttttcaatcgacgaccattatcagcatccagt |
18232175 |
T |
|
| Q |
842 |
acctgtaataattaaccttagtacttgttattctctcagataaaaaagcatacttagcaggagccatgttaaggaaaagaaacttaggcaaggatataag |
941 |
Q |
| |
|
||||||||| || ||||||||||| |||||||||||||||||| ||||||||||| | |||| | || |||||||||||||| |||| || |||| ||| |
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|
| T |
18232174 |
acctgtaatgataaaccttagtacatgttattctctcagataacaaagcatacttcgtgggagtcgtgctaaggaaaagaaacatagggaacgataaaag |
18232075 |
T |
|
| Q |
942 |
tagacctc |
949 |
Q |
| |
|
||||||| |
|
|
| T |
18232074 |
cagacctc |
18232067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 5e-31
Query Start/End: Original strand, 154 - 295
Target Start/End: Complemental strand, 18232908 - 18232771
Alignment:
| Q |
154 |
aaactgaatcaaataacataatgtaaactaaaagctaactaacatgaaatagaaagagcataaactactactatctaactttcataatcaagatgctaca |
253 |
Q |
| |
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|||||||||||| ||||| ||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||| || |||||||||| | |
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| T |
18232908 |
aaactgaatcaagtaacacaatgtaaactagaagctaacaaacatgaaatagaaatagcataaactactactatctaacatttataatcaaga------a |
18232815 |
T |
|
| Q |
254 |
tatggcagagattcatgcttcaattt--acagttcatttgaatg |
295 |
Q |
| |
|
||| ||||||||||||| ||| |||| |||||||||||||||| |
|
|
| T |
18232814 |
tatagcagagattcatgtttctatttacacagttcatttgaatg |
18232771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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