View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15352_low_10 (Length: 346)
Name: NF15352_low_10
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 9 - 331
Target Start/End: Complemental strand, 38753145 - 38752823
Alignment:
| Q |
9 |
tgtgctattggcattgagaagagtaattggagttttctttgaagctctagatctttttctgattggtttgaatgtgttgttctttggggtcaagtgacca |
108 |
Q |
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| T |
38753145 |
tgtgctattggcattgagaagagtgattggagttttctttgaagctctagatctttttctgattggtttgaatgtgttgttctttggggtcaagtgacca |
38753046 |
T |
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| Q |
109 |
tttgatgacatggtgggacttgttgtcaccatagttgcatgtgagaatccttccatgctaatatccatgaaaggttgttgatgatgatgatgatagaatt |
208 |
Q |
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| T |
38753045 |
tttgatgacatggtgggacttgttgtaaccatagttgcatgtgagaatccttccatgctaatatccatgaaaggttgttgatgatgatgatgatagaatt |
38752946 |
T |
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| Q |
209 |
gcatacactgatcatcagtagtagtagcaataccattcatggtttcaacaagtggtggtatcactcttatgtcaaattaagaatgccctattctgagagc |
308 |
Q |
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| T |
38752945 |
gcatacactgatcatcagtagtagtagcaataccattcatggtttcaacaagtggtggtatcactcttatgtcaaattaagaatgccctattctgagagc |
38752846 |
T |
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| Q |
309 |
aagaaagcagaagcttggtttat |
331 |
Q |
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| T |
38752845 |
aagaaagcagaagcttggtttat |
38752823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 256
Target Start/End: Original strand, 7006233 - 7006376
Alignment:
| Q |
117 |
catggtgggacttgttgtcaccatagttgcatgtga-gaatccttccatgctaatatccatgaaaggttgttgatgatgatgatgatagaattgcataca |
215 |
Q |
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| T |
7006233 |
catggttggacttgttgtcataaaagttgcatctgaagaatccttcttggcaaatatcctttcaagtttgttgatgatgatgataatataattgcataca |
7006332 |
T |
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| Q |
216 |
ctgatcatcagta---gtagtagcaataccattcatggtttcaa |
256 |
Q |
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| T |
7006333 |
ctgatcatcatgatccgtagtagcaataccattcatgatttcaa |
7006376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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