View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15352_low_12 (Length: 345)

Name: NF15352_low_12
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15352_low_12
NF15352_low_12
[»] chr1 (27 HSPs)
chr1 (9-195)||(49857912-49858096)
chr1 (3-85)||(35521548-35521630)
chr1 (3-85)||(41804090-41804172)
chr1 (9-88)||(13173767-13173846)
chr1 (3-85)||(19053993-19054075)
chr1 (34-84)||(26633465-26633515)
chr1 (35-84)||(7965976-7966025)
chr1 (9-85)||(36908512-36908588)
chr1 (264-308)||(49858165-49858209)
chr1 (35-86)||(7981219-7981270)
chr1 (17-88)||(51320690-51320761)
chr1 (34-86)||(36072303-36072355)
chr1 (3-82)||(18975177-18975256)
chr1 (3-86)||(35258929-35259012)
chr1 (3-82)||(46141719-46141798)
chr1 (3-85)||(46973138-46973220)
chr1 (3-87)||(6437596-6437680)
chr1 (3-87)||(37014882-37014966)
chr1 (34-85)||(14172048-14172099)
chr1 (33-84)||(35527100-35527151)
chr1 (33-88)||(36076644-36076699)
chr1 (34-88)||(6434684-6434738)
chr1 (3-49)||(35255793-35255839)
chr1 (38-84)||(42570077-42570123)
chr1 (36-85)||(1656174-1656223)
chr1 (33-82)||(13972001-13972050)
chr1 (34-86)||(4515959-4516011)
[»] chr7 (18 HSPs)
chr7 (3-87)||(11100504-11100588)
chr7 (3-85)||(9494863-9494945)
chr7 (9-91)||(36392053-36392135)
chr7 (3-82)||(47060864-47060943)
chr7 (9-85)||(28112776-28112852)
chr7 (21-84)||(47673003-47673066)
chr7 (36-82)||(48269618-48269664)
chr7 (35-87)||(10705180-10705232)
chr7 (9-87)||(10225906-10225985)
chr7 (9-82)||(34622436-34622509)
chr7 (33-82)||(41623902-41623951)
chr7 (37-82)||(42681931-42681976)
chr7 (3-62)||(46860468-46860527)
chr7 (35-82)||(48314611-48314658)
chr7 (9-80)||(48316323-48316394)
chr7 (4-82)||(46863402-46863480)
chr7 (10-82)||(46088920-46088992)
chr7 (10-74)||(46089709-46089773)
[»] chr6 (10 HSPs)
chr6 (3-87)||(17996537-17996621)
chr6 (9-87)||(18001146-18001224)
chr6 (9-85)||(32643584-32643660)
chr6 (33-87)||(32026037-32026091)
chr6 (9-85)||(13479660-13479736)
chr6 (3-82)||(29286166-29286245)
chr6 (9-82)||(18605982-18606055)
chr6 (3-85)||(8193266-8193348)
chr6 (4-90)||(23958819-23958905)
chr6 (35-89)||(12690874-12690930)
[»] chr5 (15 HSPs)
chr5 (9-86)||(19228709-19228786)
chr5 (35-86)||(33995237-33995288)
chr5 (9-91)||(3603211-3603293)
chr5 (9-88)||(20192284-20192363)
chr5 (3-85)||(18538392-18538474)
chr5 (9-82)||(3600273-3600346)
chr5 (3-89)||(8702255-8702341)
chr5 (3-82)||(18310078-18310157)
chr5 (3-85)||(34682191-34682273)
chr5 (35-88)||(1398535-1398588)
chr5 (9-82)||(20200211-20200284)
chr5 (9-81)||(512803-512875)
chr5 (34-85)||(1401433-1401484)
chr5 (3-88)||(34122455-34122540)
chr5 (10-87)||(25499951-25500030)
[»] chr3 (20 HSPs)
chr3 (3-88)||(30256060-30256145)
chr3 (13-88)||(48888672-48888747)
chr3 (9-85)||(29929360-29929436)
chr3 (9-85)||(29978514-29978590)
chr3 (34-85)||(29918429-29918480)
chr3 (34-85)||(29967582-29967633)
chr3 (9-85)||(43571748-43571824)
chr3 (33-85)||(45101935-45101987)
chr3 (3-82)||(46344874-46344953)
chr3 (3-85)||(66835-66917)
chr3 (33-74)||(7245096-7245137)
chr3 (10-82)||(11511337-11511409)
chr3 (10-82)||(41755091-41755163)
chr3 (34-86)||(43568859-43568911)
chr3 (3-82)||(7247917-7247996)
chr3 (34-87)||(2433031-2433084)
chr3 (14-87)||(6489265-6489338)
chr3 (35-76)||(42804398-42804439)
chr3 (3-84)||(42807657-42807738)
chr3 (10-87)||(55122172-55122249)
[»] chr2 (13 HSPs)
chr2 (4-85)||(2917617-2917698)
chr2 (3-82)||(25184886-25184965)
chr2 (4-86)||(45475373-45475455)
chr2 (3-82)||(41181374-41181453)
chr2 (33-87)||(19469917-19469971)
chr2 (4-84)||(19187281-19187361)
chr2 (33-73)||(40675699-40675739)
chr2 (34-85)||(14181901-14181952)
chr2 (12-91)||(16580473-16580552)
chr2 (3-82)||(35493398-35493477)
chr2 (33-83)||(19186683-19186733)
chr2 (9-62)||(43493320-43493373)
chr2 (10-62)||(34918409-34918461)
[»] chr8 (10 HSPs)
chr8 (4-82)||(18441499-18441577)
chr8 (13-85)||(7168022-7168094)
chr8 (3-86)||(3395825-3395908)
chr8 (10-82)||(5300684-5300756)
chr8 (3-82)||(34823073-34823152)
chr8 (5-88)||(41858180-41858263)
chr8 (33-77)||(38871741-38871785)
chr8 (40-82)||(2147050-2147092)
chr8 (9-82)||(18438571-18438644)
chr8 (42-86)||(51338-51382)
[»] chr4 (20 HSPs)
chr4 (26-84)||(48256643-48256701)
chr4 (9-85)||(958656-958732)
chr4 (9-85)||(29700365-29700441)
chr4 (3-62)||(67582-67641)
chr4 (3-78)||(49572957-49573032)
chr4 (36-85)||(3450104-3450153)
chr4 (36-85)||(18581385-18581434)
chr4 (33-85)||(955726-955778)
chr4 (35-87)||(51644563-51644615)
chr4 (3-86)||(21472541-21472624)
chr4 (9-84)||(37959783-37959858)
chr4 (35-90)||(44558629-44558684)
chr4 (3-85)||(4768612-4768694)
chr4 (3-85)||(51426471-51426553)
chr4 (38-87)||(34151541-34151590)
chr4 (33-84)||(21470838-21470889)
chr4 (36-89)||(38464855-38464908)
chr4 (40-88)||(4980011-4980059)
chr4 (35-83)||(33383741-33383789)
chr4 (33-85)||(49422077-49422129)
[»] scaffold0188 (1 HSPs)
scaffold0188 (33-86)||(27376-27429)
[»] scaffold0147 (1 HSPs)
scaffold0147 (36-85)||(885-934)
[»] scaffold0618 (1 HSPs)
scaffold0618 (36-82)||(3823-3869)
[»] scaffold0388 (1 HSPs)
scaffold0388 (35-85)||(11799-11849)
[»] scaffold0126 (1 HSPs)
scaffold0126 (35-85)||(15926-15976)


Alignment Details
Target: chr1 (Bit Score: 144; Significance: 1e-75; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 9 - 195
Target Start/End: Original strand, 49857912 - 49858096
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaatagaaatgttaataaatagt 108  Q
    |||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  49857912 cagttaactgccgagggggcatttacgtattttacttgtgt--ctcaaccttataaaatgtgtcaacaacaatttttaaatagaaatgttaataaatagt 49858009  T
Q  109 tcatttcatttcataaaaatgatggttactttatagatttatatacaaaaagtacctatatacttgcaagtgtagcataaattattt 195  Q
    ||||||||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||    
T  49858010 tcatttcatttcataaaaatgatcgttaatttatagatttatatacaaagagtacctatatactcgcaagtgtaccataaattattt 49858096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 35521630 - 35521548
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| |||||||||| |||| |||||    |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  35521630 cctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttc 35521548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 41804090 - 41804172
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| |||||||||| ||| ||||||    |||||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  41804090 cctcggcagttaactgccgaaggggcaaaagcgtattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttc 41804172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 13173846 - 13173767
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    |||||||||| ||||||||||     ||||||||||||||||||||| |||||| |||| ||||||||||||||||||||    
T  13173846 cagttaactgccgagggggcaaaatagtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttcaaa 13173767  T

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Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 19054075 - 19053993
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| |||||||||||||||||||||   |||||||||||| ||||  |||| |||||| |||| |||||||||||||||||    
T  19054075 cctcggcagttaactgtcgagggggcaaaaacgtattttactcgtgtttctcagccttatgaaatgtgtcaacaacaattttc 19053993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 26633515 - 26633465
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    ||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  26633515 cgtattttacttgtgtgcctcaaccttatgaaatgtgtcaacaacaatttt 26633465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 35 - 84
Target Start/End: Complemental strand, 7966025 - 7965976
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||    
T  7966025 gtattttacttttgtgcctcaaccttatgaaatatgtcaacaacaatttt 7965976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 36908588 - 36908512
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||| ||||| ||||   | ||||||||||||||||||||| ||||||||||| |||||||| ||||||||    
T  36908588 cagttaactgccgaggaggcaaaaatgtattttacttgtgtgcctcatccttataaaatgtgtcaacatcaattttc 36908512  T

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Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 264 - 308
Target Start/End: Original strand, 49858165 - 49858209
Alignment:
Q  264 tggtatagtttttgttttggtgaagaaatcaattcttgcagaatt 308  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  49858165 tggtatagtttttgttttgttgaagaaatcaattcttgcagaatt 49858209  T

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Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 7981219 - 7981270
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    ||||||||||||||| |||||||||||| |||| ||||||||||||||||||    
T  7981219 gtattttacttgtgttcctcaaccttatgaaatgtgtcaacaacaattttca 7981270  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 17 - 88
Target Start/End: Complemental strand, 51320761 - 51320690
Alignment:
Q  17 tgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    ||||||| ||| ||||||||||||||||||||||  ||| ||||||||||  ||| ||||||||||||||||    
T  51320761 tgtcgagagggtatttacgtattttacttgtgtgtttcagccttataaaaggtgtgaacaacaattttcaaa 51320690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 36072355 - 36072303
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    ||||||||| |||||||||| |||||||| |||| ||||||||||||||||||    
T  36072355 cgtattttatttgtgtgccttaaccttatgaaatgtgtcaacaacaattttca 36072303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 18975177 - 18975256
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||| | ||||||||||   ||||||||||||||||| ||||| | ||||| ||| ||||||||||||||    
T  18975177 cctcgacagttaaccgccgagggggcaaaaacgtattttacttgtgtacctcagctttatacaatgtgtcaacaacaatt 18975256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 35258929 - 35259012
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    ||||| |||||||||| |||  | |||||||||||||||||||||||| |||| |||||| |||| ||| | || |||||||||    
T  35258929 cctcggcagttaactgccgaatgagcatttacgtattttacttgtgtgtctcagccttatgaaatgtgtgagcagcaattttca 35259012  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 46141798 - 46141719
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||| |||| |||||    |||||||||||||||| ||||| ||||||  ||||||||||||||||||    
T  46141798 cctcggcagttaactgccgagagggcaaaatcgtattttacttgtgtacctcagccttatgcaatatgtcaacaacaatt 46141719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 46973220 - 46973138
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| |||||||||| | ||||||||    ||||||||||||||||| |||| ||| || |||| |||||||||||||||||    
T  46973220 cctcggcagttaactgccaagggggcaaaatcgtattttacttgtgtgtctcagcctaatgaaatgtgtcaacaacaattttc 46973138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 6437596 - 6437680
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||| |||||||||| |||| |||||    |||||||||||||||||||||| | ||||  ||| |||||||||||||| ||||    
T  6437596 cctcggcagttaactgccgagagggcaaaagcgtattttacttgtgtgcctcagctttatgcaatgtgtcaacaacaattctcaa 6437680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 37014966 - 37014882
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||| |||||||||||||||||||||    ||||||||||| ||||||| |||| |||| |||| ||  |||||||||| ||||    
T  37014966 cctcggcagttaactgtcgagggggcaaaatcgtattttactagtgtgccacaacattatcaaatgtgggaacaacaattctcaa 37014882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 14172099 - 14172048
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||||||||||| ||| ||||||  ||| |||||||||||||||||    
T  14172099 cgtattttacttgtgtgcttcagccttatggaatgtgtcaacaacaattttc 14172048  T

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Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 35527100 - 35527151
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    ||||||||||||||||||||||| |||||| |||| |||||| | |||||||    
T  35527100 acgtattttacttgtgtgcctcagccttatgaaatgtgtcaagagcaatttt 35527151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 88
Target Start/End: Original strand, 36076644 - 36076699
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    |||||||||||||||||  |||| |||||| |||| |||||||| |||||||||||    
T  36076644 acgtattttacttgtgtttctcagccttatgaaatgtgtcaacagcaattttcaaa 36076699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 34 - 88
Target Start/End: Complemental strand, 6434738 - 6434684
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    ||||||||||| |||||||||| ||| ||  |||||||||||| |||||||||||    
T  6434738 cgtattttactcgtgtgcctcagcctcatgcaatatgtcaacatcaattttcaaa 6434684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 49
Target Start/End: Complemental strand, 35255839 - 35255793
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgt 49  Q
    ||||| |||||||||| | ||||||||||||||||||||||| ||||    
T  35255839 cctcgacagttaactgccaagggggcatttacgtattttactcgtgt 35255793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 42570123 - 42570077
Alignment:
Q  38 ttttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    |||||||||||||||||| |||||| |||  ||||||||||||||||    
T  42570123 ttttacttgtgtgcctcagccttatgaaacgtgtcaacaacaatttt 42570077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 1656174 - 1656223
Alignment:
Q  36 tattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||||||| ||||  ||||||||||| |||| |||||||||||||||||    
T  1656174 tattttactcgtgtttctcaaccttatgaaatgtgtcaacaacaattttc 1656223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 13972050 - 13972001
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||||||||||||||||  |||| |||||| |||| ||||||||||||||    
T  13972050 acgtattttacttgtgtttctcagccttatgaaatgtgtcaacaacaatt 13972001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 4516011 - 4515959
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    |||||||||||||||||||||| ||| || |||| |||||| | |||||||||    
T  4516011 cgtattttacttgtgtgcctcaccctaatgaaatgtgtcaaaagcaattttca 4515959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 4e-26; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 87
Target Start/End: Original strand, 11100504 - 11100588
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||| |||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  11100504 cctcggcagttaactgccaagggggcatttacgtattttacatgtgtgcctcgaccttataaaatgtgtcaacaacaattttcaa 11100588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 9494863 - 9494945
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| |||||||||| ||||||||||| ||| |||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  9494863 cctcggcagttaactgccgagggggcatatacctattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttc 9494945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 9 - 91
Target Start/End: Complemental strand, 36392135 - 36392053
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaatag 91  Q
    |||||||||||||||||||||   ||||||||||||||||||||| | ||||||  ||| |||||||||||||| ||||||||    
T  36392135 cagttaactgtcgagggggcaaaaacgtattttacttgtgtgcctaagccttatgtaatgtgtcaacaacaattctcaaatag 36392053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 47060943 - 47060864
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||| ||||||||||   ||||||||||||||| ||||||| |||||| |||||||||||||| ||||    
T  47060943 cctcgacagttaactgccgagggggcaaaaacgtattttacttgtatgcctcagccttatgaaatatgtcaacaataatt 47060864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 28112852 - 28112776
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||| |||| |||||    ||||||||||||||||| ||||||||||| |||| |||||||||||||||||    
T  28112852 cagttaactgccgagagggcaaaagcgtattttacttgtgtgtctcaaccttatgaaatgtgtcaacaacaattttc 28112776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Original strand, 47673003 - 47673066
Alignment:
Q  21 gagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    ||||| |||||||||||||||| ||||||| |||| |||||| ||||||||||||| |||||||    
T  47673003 gagggagcatttacgtattttatttgtgtgtctcagccttatgaaatatgtcaacatcaatttt 47673066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 48269664 - 48269618
Alignment:
Q  36 tattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||||||||||||||||||| ||||||||||| ||||||||||||||    
T  48269664 tattttacttgtgtgcctcagccttataaaatgtgtcaacaacaatt 48269618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 87
Target Start/End: Complemental strand, 10705232 - 10705180
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||||||||||||||||| | |||||| ||||||||||| ||||||||||||    
T  10705232 gtattttacttgtgtgccttagccttatgaaatatgtcaataacaattttcaa 10705180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 10225906 - 10225985
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttat-aaaatatgtcaacaacaattttcaa 87  Q
    |||||||||||||||| ||||   || |||||||||| ||||| ||| |||||| ||||| |||||||||||||||||||    
T  10225906 cagttaactgtcgaggaggcaaaaacatattttacttatgtgcttcagccttatgaaaatgtgtcaacaacaattttcaa 10225985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 34622509 - 34622436
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||||||||||| ||||||||   |||||  |||||||||||||||| ||||||  ||| ||||||||||||||    
T  34622509 cagttaactgtcaagggggcaaaaacgtaaattacttgtgtgcctcagccttatgcaatgtgtcaacaacaatt 34622436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 41623902 - 41623951
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||||||||||||||||||||||||||||  ||| |||||||| |||||    
T  41623902 acgtattttacttgtgtgcctcaaccttatgtaatgtgtcaacagcaatt 41623951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 82
Target Start/End: Complemental strand, 42681976 - 42681931
Alignment:
Q  37 attttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||||||| ||||||||| |||||||||||||||||| |||||||    
T  42681976 attttacttatgtgcctcagccttataaaatatgtcaagaacaatt 42681931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 46860527 - 46860468
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttat 62  Q
    ||||| |||||||||| ||||||||||    |||||||||||||||||||||| ||||||    
T  46860527 cctcgacagttaactgccgagggggcaaaagcgtattttacttgtgtgcctcagccttat 46860468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 48314658 - 48314611
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||||||||||||| ||||||||||||  ||| ||||||||||||||    
T  48314658 gtattttacttgtgtacctcaaccttatgcaatgtgtcaacaacaatt 48314611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 9 - 80
Target Start/End: Original strand, 48316323 - 48316394
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaa 80  Q
    |||||||||||| ||||||||   || ||||||||||||||| |||| |||||| |||| || |||||||||    
T  48316323 cagttaactgtcaagggggcaaaaacttattttacttgtgtgtctcagccttatgaaatgtgccaacaacaa 48316394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 46863402 - 46863480
Alignment:
Q  4 ctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||| |||||||||| ||| ||||||   |||||||||||||||||| |||| ||||||  |||  |||||||||||||    
T  46863402 ctcggcagttaactgccgatggggcaaaaacgtattttacttgtgtgtctcagccttatgcaatgcgtcaacaacaatt 46863480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 46088992 - 46088920
Alignment:
Q  10 agttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||||||| |||||||||||||  || ||||||| ||||  |||| |||||||| || ||| ||||||||||    
T  46088992 agttaactggcgagggggcatttttgtcttttactagtgtttctcagccttataacatgtgtaaacaacaatt 46088920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 74
Target Start/End: Original strand, 46089709 - 46089773
Alignment:
Q  10 agttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaa 74  Q
    ||||||||| ||||||||||||| ||| ||||||| ||||  |||| |||||||| || ||||||    
T  46089709 agttaactgccgagggggcattttcgtcttttactggtgtttctcagccttataacatgtgtcaa 46089773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 3 - 87
Target Start/End: Complemental strand, 17996621 - 17996537
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||| |||||||||| | |||||||||||||||||||||| |||||||||| |||||||||||| |||||||||||||||||||    
T  17996621 cctcggcagttaactgccaagggggcatttacgtattttacatgtgtgcctcgaccttataaaatgtgtcaacaacaattttcaa 17996537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 9 - 87
Target Start/End: Complemental strand, 18001224 - 18001146
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    |||||||||| |||  |||||||||| |||||||||||||| |||||||||||| |||| |||||||||||||||||||    
T  18001224 cagttaactgccgatagggcatttacatattttacttgtgtacctcaaccttatgaaatgtgtcaacaacaattttcaa 18001146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 32643584 - 32643660
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||| ||||| ||||||||||||||||||||||| || |||||||||| |||| ||| |||||||||||||    
T  32643584 cagttaactgccgaggaggcatttacgtattttacttgtgggcttcaaccttatgaaatgtgtgaacaacaattttc 32643660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 32026091 - 32026037
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||||||||||||||||||||| |||||| |||| |||||||||||||||||||    
T  32026091 acgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttcaa 32026037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 13479736 - 13479660
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||  ||||||||||    |||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  13479736 cagttaactaccgagggggcaaaagcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttc 13479660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 29286245 - 29286166
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||  ||||||||||   |||||  |||||||||||||||||||||||  ||| ||||||||||||||    
T  29286245 cctcggcagttaactaccgagggggcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatgtgtcaacaacaatt 29286166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 18606055 - 18605982
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||||||||  ||||||||||   |||||||||||| |||||||||| ||| ||| ||| ||||||||||||||    
T  18606055 cagttaactaccgagggggcaaaaacgtattttactcgtgtgcctcagcctcatacaatgtgtcaacaacaatt 18605982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 8193266 - 8193348
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| ||||||||||  |  ||||||||||||| ||||||| ||||  ||||||||| | | || |||||||||||||||||    
T  8193266 cctcggcagttaactgctgcaggggcatttacgtcttttactggtgtttctcaaccttctcatatgtgtcaacaacaattttc 8193348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 4 - 90
Target Start/End: Complemental strand, 23958905 - 23958819
Alignment:
Q  4 ctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaata 90  Q
    |||| |||||||||| ||||||| ||   |||||||||| ||| ||| |||| |||||| | || ||||||||||||||||| ||||    
T  23958905 ctcggcagttaactgccgaggggacaaaaacgtattttagttgggtgtctcagccttatcatatgtgtcaacaacaattttctaata 23958819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 12690930 - 12690874
Alignment:
Q  35 gtattttacttgtgtgc--ctcaaccttataaaatatgtcaacaacaattttcaaat 89  Q
    ||||||||||||||||   ||||| |||||||||| |||||||||||||||| ||||    
T  12690930 gtattttacttgtgtgtgtctcaatcttataaaatgtgtcaacaacaatttttaaat 12690874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 19228709 - 19228786
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||| |||||| |||| ||||||||||||||||||    
T  19228709 cagttaactgccgagggggcatttacgtattttacttgtgtgtctcagccttatcaaatgtgtcaacaacaattttca 19228786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 86
Target Start/End: Original strand, 33995237 - 33995288
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  33995237 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaactttca 33995288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 91
Target Start/End: Original strand, 3603211 - 3603293
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaatag 91  Q
    ||||||||||||||||| |||   ||||||||||||| ||||||||| ||||||  ||| |||||||||||||| ||||||||    
T  3603211 cagttaactgtcgagggagcaaaaacgtattttacttatgtgcctcagccttatgcaatgtgtcaacaacaattctcaaatag 3603293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 20192363 - 20192284
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    |||||||||| ||| ||||||    |||||||||||||||||||||| |||||| |||| |||||||||||||| |||||    
T  20192363 cagttaactgacgaaggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattctcaaa 20192284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 3 - 85
Target Start/End: Original strand, 18538392 - 18538474
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| || ||||||| ||||||||||    |||||||||||||||||||||| ||| || |||| |||||||||||||||||    
T  18538392 cctcgacaattaactgccgagggggcaaaatcgtattttacttgtgtgcctcagcctaatgaaatgtgtcaacaacaattttc 18538474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 3600346 - 3600273
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||||||||| ||||||||||   || ||||||||||||||| |||||| |||| |||| ||||||||||||||    
T  3600346 cagttaactgccgagggggcaaaaacatattttacttgtgtggctcaactttatgaaatgtgtcaacaacaatt 3600273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 89
Target Start/End: Original strand, 8702255 - 8702341
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaa-ccttataaaatatgtcaacaacaattttcaaat 89  Q
    ||||| ||||||||||||||||| |||    |||||||||||||||| ||||||  |||||||||||||| ||||| |||||||||||    
T  8702255 cctcggcagttaactgtcgagggagcaaaatcgtattttacttgtgtacctcaagtcttataaaatatgtgaacaa-aattttcaaat 8702341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 18310078 - 18310157
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| ||||||||||  |||| ||||   ||||||||||||||||||||||| ||||||  ||| ||||||||||||||    
T  18310078 cctcgacagttaactgctgaggaggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaacaatt 18310157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 34682273 - 34682191
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| |||||||||||| |||| |||    |||||||||||||||  ||||| |||||| |||| |||||||||||||||||    
T  34682273 cctcgacagttaactgtcaagggagcaaaagcgtattttacttgtgaacctcagccttatgaaatgtgtcaacaacaattttc 34682191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 1398588 - 1398535
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    ||||||||||| |||| |||||||||||  ||| ||||||||||||||||||||    
T  1398588 gtattttacttctgtgtctcaaccttatgtaatgtgtcaacaacaattttcaaa 1398535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 20200211 - 20200284
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||||||||| ||| ||||||   |||||||||| |||||||||||| ||||||  ||| ||||||||||||||    
T  20200211 cagttaactgccgatggggcaaaaacgtattttatttgtgtgcctcagccttatgcaatgtgtcaacaacaatt 20200284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 81
Target Start/End: Original strand, 512803 - 512875
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaat 81  Q
    |||||||||||||||| ||||   ||||| |||||||||||   |||||||||| |||| |||||||||||||    
T  512803 cagttaactgtcgaggaggcaaaaacgtactttacttgtgtttatcaaccttatcaaatgtgtcaacaacaat 512875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 1401433 - 1401484
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||||||||||||||| |||| |||||| |||| ||||||||||| |||||    
T  1401433 cgtattttacttgtgtgtctcagccttatgaaatgtgtcaacaacagttttc 1401484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 88
Target Start/End: Complemental strand, 34122540 - 34122455
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    ||||| |||||||||| ||| ||||||    |||||||||||  |||| | ||||||||| |||||||  ||||||||||||||||    
T  34122540 cctcggcagttaactgccgaaggggcaaaatcgtattttactaatgtggcacaaccttatcaaatatgggaacaacaattttcaaa 34122455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 25499951 - 25500030
Alignment:
Q  10 agttaactgtcgagggggcatttacgtattttacttgtgt--gcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||||||| ||||||||||    ||||||||||||||||  |||||| ||||||  ||| |||||||| ||||||||||    
T  25499951 agttaactgccgagggggcaaaagcgtattttacttgtgttcgcctcagccttatgtaatgtgtcaacaccaattttcaa 25500030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 3 - 88
Target Start/End: Original strand, 30256060 - 30256145
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    ||||| |||||||||  | |||||||||||| ||||||||||||||||||||| | |||| |||| ||||||||||||||||||||    
T  30256060 cctcggcagttaactaccaagggggcatttatgtattttacttgtgtgcctcagctttatgaaatgtgtcaacaacaattttcaaa 30256145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 13 - 88
Target Start/End: Complemental strand, 48888747 - 48888672
Alignment:
Q  13 taactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    |||||| ||||||||||||||||||||||||||||||||||||  ||||| |||||||| ||||  ||||||||||    
T  48888747 taactgccgagggggcatttacgtattttacttgtgtgcctcagtcttatgaaatatgtgaacagtaattttcaaa 48888672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 29929436 - 29929360
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||||||||||||||| |||    | |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  29929436 cagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttc 29929360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 9 - 85
Target Start/End: Complemental strand, 29978590 - 29978514
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||||||||||||||| |||    | |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  29978590 cagttaactgtcgagggagcaaaatcatattttacttgtgtgcctcagccttataaaatgtgtcaacaacaattttc 29978514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 29918429 - 29918480
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  29918429 cgtattttacttatgtgcctcagccttatgaaatatgtcaacaacaattttc 29918480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 29967582 - 29967633
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||||| ||||||||| |||||| ||||||||||||||||||||||    
T  29967582 cgtattttacttatgtgcctcagccttatgaaatatgtcaacaacaattttc 29967633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 43571748 - 43571824
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||| ||||||||||   || |||||||||||||| ||| ||||||||  ||| |||||||||||||||||    
T  43571748 cagttaactgccgagggggcaaaaacatattttacttgtgtacctgaaccttatgtaatgtgtcaacaacaattttc 43571824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 85
Target Start/End: Original strand, 45101935 - 45101987
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||||||||||| |||||||||||||||| |||| |||| ||||||||||||    
T  45101935 acgtattttacttatgtgcctcaaccttatgaaatgtgtcgacaacaattttc 45101987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 46344953 - 46344874
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||| ||||||||||   |  |||||||||||||||||||||||||||  ||| |||||||| |||||    
T  46344953 cctcgacagttaactgccgagggggcaaaaaaatattttacttgtgtgcctcaaccttatccaatttgtcaacatcaatt 46344874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 66917 - 66835
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| |||||||||| ||||||||||    ||||||||||| ||||| |||| |||||| |||| ||||||||||| |||||    
T  66917 cctcggcagttaactgccgagggggcaaaagcgtattttactcgtgtgtctcagccttatcaaatgtgtcaacaacagttttc 66835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 74
Target Start/End: Complemental strand, 7245137 - 7245096
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaa 74  Q
    |||||||||||||||||||||||||||||| |||| ||||||    
T  7245137 acgtattttacttgtgtgcctcaaccttatgaaatgtgtcaa 7245096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 11511337 - 11511409
Alignment:
Q  10 agttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||||||||||||| ||||||| ||| ||||||| ||||  |||| |||||||| || ||||||| ||||||    
T  11511337 agttaactgtcgaggaggcattttcgtcttttactggtgtttctcagccttataacatgtgtcaacgacaatt 11511409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 41755091 - 41755163
Alignment:
Q  10 agttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||||||||||||||| ||||| ||| ||||||| ||||  |||| |||||||| || |||||||| |||||    
T  41755091 agttaactgtcgaggggacattttcgtcttttactggtgtttctcagccttataacatgtgtcaacagcaatt 41755163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 86
Target Start/End: Complemental strand, 43568911 - 43568859
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    ||||||||||| ||||  |||| ||||||||||| ||||||||||||||||||    
T  43568911 cgtattttactcgtgtttctcagccttataaaatgtgtcaacaacaattttca 43568859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 7247917 - 7247996
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||| ||||||||||    ||||||||| | |||||||||| ||||||  ||| ||||||||||||||    
T  7247917 cctcggcagttaactgccgagggggcaaaagcgtattttattcgtgtgcctcagccttatccaatgtgtcaacaacaatt 7247996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 87
Target Start/End: Original strand, 2433031 - 2433084
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||||||||| |||||||||| ||||||  ||| |||||||||||||| ||||    
T  2433031 cgtattttactcgtgtgcctcagccttatgcaatgtgtcaacaacaattctcaa 2433084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 87
Target Start/End: Complemental strand, 6489338 - 6489265
Alignment:
Q  14 aactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||| ||||||||||   |||||  |||||||||||||||||||||||  ||| |||||||| ||||| ||||    
T  6489338 aactgccgagggggcaaaaacgtaaattacttgtgtgcctcaaccttatgcaatgtgtcaacagcaattctcaa 6489265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 42804439 - 42804398
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaaca 76  Q
    ||||||||||||||||||||| |||||| |||| ||||||||    
T  42804439 gtattttacttgtgtgcctcagccttatgaaatgtgtcaaca 42804398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 84
Target Start/End: Original strand, 42807657 - 42807738
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    ||||| |||||||||| ||||| ||||   | |||||||| |||||||| ||| |||||| |||| ||| ||||||||||||    
T  42807657 cctcgacagttaactgccgaggaggcaaaaatgtattttatttgtgtgcatcagccttatgaaatgtgttaacaacaatttt 42807738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 87
Target Start/End: Original strand, 55122172 - 55122249
Alignment:
Q  10 agttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||||||||||||||||||||| ||| ||||||| ||||  ||||  ||||| | || || ||||||||||| ||||    
T  55122172 agttaactgtcgagggggcattttcgtcttttactagtgtttctcagtcttatgacatgtgccaacaacaattctcaa 55122249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 4 - 85
Target Start/End: Complemental strand, 2917698 - 2917617
Alignment:
Q  4 ctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||| |||||||||| ||||||||||   ||||||||||||| ||||||||| |||||| |||| |||||||||||||||||    
T  2917698 ctcggcagttaactgccgagggggcaaaaacgtattttacttttgtgcctcagccttatgaaatgtgtcaacaacaattttc 2917617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 25184886 - 25184965
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| ||||||||||  |||||||||   |||||||||||| |||||||||||||||||  ||| ||||||||||||||    
T  25184886 cctcgacagttaactgctgagggggcaaaaacgtattttactcgtgtgcctcaaccttatgcaatctgtcaacaacaatt 25184965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 45475455 - 45475373
Alignment:
Q  4 ctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    |||| |||||||||| ||||||||||    ||||||||||||||||| |||| |||||| |||| |||||||| |||||||||    
T  45475455 ctcggcagttaactgccgagggggcaaaatcgtattttacttgtgtgtctcagccttatgaaatgtgtcaacatcaattttca 45475373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Complemental strand, 41181453 - 41181374
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||| ||||||||||   |||||||||||| |||||||||| ||||||  ||| |||||||| |||||    
T  41181453 cctcggcagttaactgccgagggggcaaaaacgtattttactcgtgtgcctcagccttatgcaatgtgtcaacatcaatt 41181374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 19469971 - 19469917
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||||||||||||||||  ||||||||||||||| | |||| ||||||||||||    
T  19469971 acgtattttacttgtgtgtgtcaaccttataaaatgtatcaagaacaattttcaa 19469917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 19187281 - 19187361
Alignment:
Q  4 ctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    |||| |||||||||| ||||||||||   |||||||||||||||||| |||| |||||| | || | | ||||||||||||    
T  19187281 ctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgatatgtctgaacaacaatttt 19187361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 73
Target Start/End: Complemental strand, 40675739 - 40675699
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtca 73  Q
    |||||||||||||||||| ||||||||||| ||||||||||    
T  40675739 acgtattttacttgtgtgtctcaaccttatgaaatatgtca 40675699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 34 - 85
Target Start/End: Original strand, 14181901 - 14181952
Alignment:
Q  34 cgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||||||||||||| | ||||||  |||||||||||| ||||||||    
T  14181901 cgtattttacttgtgtgcctgagccttatgtaatatgtcaacagcaattttc 14181952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 12 - 91
Target Start/End: Complemental strand, 16580552 - 16580473
Alignment:
Q  12 ttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaatag 91  Q
    ||||||||||||| ||||   | |||||||||| ||||| |||| ||||||  ||| |||||||||||||| ||||||||    
T  16580552 ttaactgtcgaggaggcaaaaatgtattttactcgtgtgtctcagccttatgcaatgtgtcaacaacaattctcaaatag 16580473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 35493398 - 35493477
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||  ||||||||||    ||||||||||| ||||| |||||||||||  ||| ||||||||||||||    
T  35493398 cctcggcagttaactaccgagggggcaaaagcgtattttactcgtgtgtctcaaccttatgcaatgtgtcaacaacaatt 35493477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 83
Target Start/End: Complemental strand, 19186733 - 19186683
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattt 83  Q
    |||||||||||||||||| |||| |||||| | || |||||||||||||||    
T  19186733 acgtattttacttgtgtgtctcagccttatgatatgtgtcaacaacaattt 19186683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 43493320 - 43493373
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttat 62  Q
    |||||||||| ||||||||||   |||||||||||||||||| |||| ||||||    
T  43493320 cagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttat 43493373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 62
Target Start/End: Complemental strand, 34918461 - 34918409
Alignment:
Q  10 agttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttat 62  Q
    ||||||||| ||||||||||   ||||||| ||||||||||||||| ||||||    
T  34918461 agttaactgacgagggggcaaaaacgtattgtacttgtgtgcctcagccttat 34918409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 4 - 82
Target Start/End: Original strand, 18441499 - 18441577
Alignment:
Q  4 ctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||| |||||||||| ||||||||||   |||||||||||||||||| |||| |||||| |||| ||||||||||||||    
T  18441499 ctcggcagttaactgccgagggggcaaaaacgtattttacttgtgtgtctcagccttatgaaatgtgtcaacaacaatt 18441577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 85
Target Start/End: Complemental strand, 7168094 - 7168022
Alignment:
Q  13 taactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||| ||||||||||||    |||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  7168094 taacagtcgagggggcaaaatcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttc 7168022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 86
Target Start/End: Complemental strand, 3395908 - 3395825
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    ||||| ||||||||||  |||||||||   || ||||||||||||||||||||||||||| |||| |||||| | |||||||||    
T  3395908 cctcggcagttaactgctgagggggcaaaaacatattttacttgtgtgcctcaaccttatgaaatgtgtcaagagcaattttca 3395825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 10 - 82
Target Start/End: Complemental strand, 5300756 - 5300684
Alignment:
Q  10 agttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||||||||||||||| ||   |||||||||||| ||||  ||||||||||| |||| ||||||||||||||    
T  5300756 agttaactgtcgaggggacaaaaacgtattttactcgtgtttctcaaccttatcaaatgtgtcaacaacaatt 5300684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 34823073 - 34823152
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||| |||| || ||   |||||| |||| ||||||||||||||||||| ||| ||||||||||||||    
T  34823073 cctcgacagttaactgccgagaggacaaaaacgtatattacgtgtgtgcctcaaccttatacaatgtgtcaacaacaatt 34823152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 5 - 88
Target Start/End: Original strand, 41858180 - 41858263
Alignment:
Q  5 tcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    |||||||||||||| ||||||||||   |||||||||||| ||||  |||| || ||| |||| |||||||||||||| |||||    
T  41858180 tcgccagttaactgccgagggggcaaaaacgtattttactcgtgtttctcagccatatgaaatgtgtcaacaacaattctcaaa 41858263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 38871785 - 38871741
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaa 77  Q
    |||||||||||||||||||||||| ||||| |||| |||||||||    
T  38871785 acgtattttacttgtgtgcctcaatcttatgaaatgtgtcaacaa 38871741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 2147050 - 2147092
Alignment:
Q  40 ttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    ||||| |||||||||||||||||| ||| ||||||||||||||    
T  2147050 ttactcgtgtgcctcaaccttatacaatgtgtcaacaacaatt 2147092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 18438644 - 18438571
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||||||||| ||| ||||||    |||||||||||||||||| ||| ||||||  ||| ||||||||||||||    
T  18438644 cagttaactgccgaaggggcaaaagcgtattttacttgtgtgcatcagccttatgcaatgtgtcaacaacaatt 18438571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 86
Target Start/End: Complemental strand, 51382 - 51338
Alignment:
Q  42 acttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    |||||||||||| | |||||| |||| ||||||||||||||||||    
T  51382 acttgtgtgcctgagccttatgaaatgtgtcaacaacaattttca 51338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 26 - 84
Target Start/End: Original strand, 48256643 - 48256701
Alignment:
Q  26 ggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    |||||||||||||||||||||||||||||| |||||| |||| ||| ||||||||||||    
T  48256643 ggcatttacgtattttacttgtgtgcctcagccttatgaaatgtgtgaacaacaatttt 48256701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 958656 - 958732
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||||||||||||| || ||   ||||||||||||| ||||||||| ||||||||||| |||||||| ||||||||    
T  958656 cagttaactgtcgagaggacaaaaacgtattttacttatgtgcctcagccttataaaatgtgtcaacatcaattttc 958732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 85
Target Start/End: Original strand, 29700365 - 29700441
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||||||||| | ||    |||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  29700365 cagttaactgtcgaggagacaaaagcgtattttacttgtgtgcctcagccttatgaaatgtgtcaacaacaattttc 29700441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 62
Target Start/End: Complemental strand, 67641 - 67582
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttat 62  Q
    ||||| |||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||    
T  67641 cctcgacagttaactgtcgagggggcattttcgtattttacttgcgtgtctcagccttat 67582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 78
Target Start/End: Original strand, 49572957 - 49573032
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaac 78  Q
    ||||| |||||||||||||| ||||||   ||||||||||||||||||||||| ||||||  ||| ||||||||||    
T  49572957 cctcgacagttaactgtcgatggggcaaaaacgtattttacttgtgtgcctcagccttatgcaatgtgtcaacaac 49573032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 3450104 - 3450153
Alignment:
Q  36 tattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  3450104 tattttacttgtgtgcctcagccttatgaaatatgtcaacagcaattttc 3450153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 18581385 - 18581434
Alignment:
Q  36 tattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| ||||||||||||||||||||| |||| |||||||||||||||||    
T  18581385 tatttaacttgtgtgcctcaaccttatgaaatgtgtcaacaacaattttc 18581434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 955778 - 955726
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||||||||||||||||||||||| |||| |||| |||||||| ||||||||    
T  955778 acgtattttacttgtgtgcctcaactttatgaaatgtgtcaacatcaattttc 955726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 51644563 - 51644615
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    ||||||||||| ||||||||| ||| ||||||| |||||||||||||||||||    
T  51644563 gtattttacttatgtgcctcagcctaataaaatgtgtcaacaacaattttcaa 51644615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 21472541 - 21472624
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    ||||| |||||||||| ||||| ||||   |||||||||||| ||||  |||| |||||| |||| ||||||||||||||||||    
T  21472541 cctcggcagttaactgccgaggcggcaaaaacgtattttactcgtgtttctcagccttatgaaatgtgtcaacaacaattttca 21472624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 84
Target Start/End: Original strand, 37959783 - 37959858
Alignment:
Q  9 cagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    |||||||||| |||||||| |   |||||||||||| |||||||||| ||||||  ||| ||||||||||||||||    
T  37959783 cagttaactgccgagggggtaaaaacgtattttactcgtgtgcctcagccttatgtaatgtgtcaacaacaatttt 37959858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 44558684 - 44558629
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaata 90  Q
    ||||||||||||||||||||| ||||||  ||| ||||||||||||||||| ||||    
T  44558684 gtattttacttgtgtgcctcagccttatgtaatgtgtcaacaacaattttctaata 44558629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 4768694 - 4768612
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| |||||||||| ||||||||||      |||||||||||||||| ||| |||||| |||| |||||||||||||||||    
T  4768694 cctcggcagttaactgccgagggggcaaaattatattttacttgtgtgcatcagccttatgaaatgtgtcaacaacaattttc 4768612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 85
Target Start/End: Complemental strand, 51426553 - 51426471
Alignment:
Q  3 cctcgccagttaactgtcgagggggcatttacgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||| ||||||||||||||  || ||   ||||||||||||||||||||| | |||||| |||  |||||||||||||||||    
T  51426553 cctcgacagttaactgtcgaaaggacaaaaacgtattttacttgtgtgcctaagccttatgaaacgtgtcaacaacaattttc 51426471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 38 - 87
Target Start/End: Complemental strand, 34151590 - 34151541
Alignment:
Q  38 ttttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaa 87  Q
    |||||||| ||||||||||| ||||  |||||||||||||||||||||||    
T  34151590 ttttacttatgtgcctcaacgttatctaatatgtcaacaacaattttcaa 34151541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 21470889 - 21470838
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatttt 84  Q
    ||||||||||||||||||||||||||||||  ||| ||| || |||||||||    
T  21470889 acgtattttacttgtgtgcctcaaccttatccaatgtgtaaagaacaatttt 21470838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 36 - 89
Target Start/End: Original strand, 38464855 - 38464908
Alignment:
Q  36 tattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaat 89  Q
    |||||||||  ||| |||||||||||| |||| |||||||||||||| ||||||    
T  38464855 tattttactcatgtacctcaaccttatgaaatgtgtcaacaacaattctcaaat 38464908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 4980011 - 4980059
Alignment:
Q  40 ttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttcaaa 88  Q
    ||||| |||||||||||||||||  ||| |||||||||||||| |||||    
T  4980011 ttactcgtgtgcctcaaccttatgcaatgtgtcaacaacaattctcaaa 4980059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 83
Target Start/End: Complemental strand, 33383789 - 33383741
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattt 83  Q
    ||||||||||||||||||| |||||||| |||| |||||| | ||||||    
T  33383789 gtattttacttgtgtgcctaaaccttatgaaatgtgtcaatagcaattt 33383741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 85
Target Start/End: Complemental strand, 49422129 - 49422077
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||| ||||||| |||| |||||| |||| ||| |||||||||||||    
T  49422129 acgtattttatttgtgtgactcagccttatgaaatgtgtaaacaacaattttc 49422077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 86
Target Start/End: Complemental strand, 27429 - 27376
Alignment:
Q  33 acgtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttca 86  Q
    ||||||||||||||||||||| ||| |||| |||| ||||||||||||||||||    
T  27429 acgtattttacttgtgtgccttaactttatgaaatgtgtcaacaacaattttca 27376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0147 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 85
Target Start/End: Original strand, 885 - 934
Alignment:
Q  36 tattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||||||||||||| |||||| ||||||||||||| ||||||||    
T  885 tattttacttgtgtgcctcagccttatgaaatatgtcaacagcaattttc 934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 82
Target Start/End: Complemental strand, 3869 - 3823
Alignment:
Q  36 tattttacttgtgtgcctcaaccttataaaatatgtcaacaacaatt 82  Q
    |||||||||||||||||||||||||||  ||| |||||||| |||||    
T  3869 tattttacttgtgtgcctcaaccttatccaatttgtcaacatcaatt 3823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0388 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 11799 - 11849
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    |||||||||||||||  ||||| |||||||||| |||||||| ||||||||    
T  11799 gtattttacttgtgtatctcaatcttataaaatgtgtcaacagcaattttc 11849  T

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Target: scaffold0126 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0126
Description:

Target: scaffold0126; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 85
Target Start/End: Original strand, 15926 - 15976
Alignment:
Q  35 gtattttacttgtgtgcctcaaccttataaaatatgtcaacaacaattttc 85  Q
    ||||||||||||| ||||||| ||| || |||| |||||||||||||||||    
T  15926 gtattttacttgtatgcctcagcctaatgaaatgtgtcaacaacaattttc 15976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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