View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15352_low_15 (Length: 333)
Name: NF15352_low_15
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 183; Significance: 6e-99; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 28927976 - 28928257
Alignment:
| Q |
1 |
tgaaaatggagatagggtctgtgggaagaagctccttgatcatgtttgagaaagagcaagatagagaaaatatgaaacgacgtggtgttcgaagttcgga |
100 |
Q |
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| T |
28927976 |
tgaaaatggagatagggtctgtgggaagaagctccttgatcatgtttgagaaagagcaagatagagaaaatatgaaacgacgtggtgttcgaagttcgga |
28928075 |
T |
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| Q |
101 |
gctcagttcagcgtaatctaagaaatggaacgagaacgaacctaagacggcggtggaagctgccggcgtagagacgatacgaacgagaatgacggcgctg |
200 |
Q |
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| T |
28928076 |
gctcagttcatcgaaatctaagaaatg----------gaacctaagacggcggtggaagctgccggcgtagagacgatacgaacgagaatgacggcgctg |
28928165 |
T |
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| Q |
201 |
gttaataagctg----agttagttaagttga----aggtttttctagatttgctcacaaatttaattttgcaataagttagtgacacatttg |
284 |
Q |
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| T |
28928166 |
gttaataagctgagttagttagttaagttgatttttttttttttttcctttgctcagaaatttaattttgcaataagttagtgacacatttg |
28928257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 59 - 153
Target Start/End: Original strand, 28922374 - 28922468
Alignment:
| Q |
59 |
agatagagaaaatatgaaacgacgtggtgttcgaagttcggagctcagttcagcgtaatctaagaaatggaacgagaacgaacctaagacggcgg |
153 |
Q |
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| T |
28922374 |
agatagagaaaatatgaaacgacgcagtgttcgaagttcggagctcagttcagcgaaatctacaaaatggaacgagaacgaacctaagacggcgg |
28922468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 146 - 284
Target Start/End: Original strand, 28922492 - 28922637
Alignment:
| Q |
146 |
gacggcggtggaagctgccggcgtagagacgatacgaacgagaatgacggcgctggttaata---agctgagttagttaagttgaa----ggtttttcta |
238 |
Q |
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| T |
28922492 |
gacggtggtggaagctgccggcgtagagacgatacgaacgatgacgacggcgctggttaatatgctgctgagttagttaagttgaatttttgtttttttt |
28922591 |
T |
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| Q |
239 |
gatttgctcacaaatttaattttgcaataagttagtgacacatttg |
284 |
Q |
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| T |
28922592 |
cttttgctcagaaatttaattttgcaataagctagtgacacatttg |
28922637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 28928974 - 28929016
Alignment:
| Q |
1 |
tgaaaatggagatagggtctgtgggaagaagctccttgatcat |
43 |
Q |
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| T |
28928974 |
tgaaaatggagatagggtatgtgggaagaagctctttgatcat |
28929016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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