View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15352_low_16 (Length: 299)

Name: NF15352_low_16
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15352_low_16
NF15352_low_16
[»] chr2 (1 HSPs)
chr2 (5-289)||(43376353-43376647)


Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 43376353 - 43376647
Alignment:
Q  5 ggtttgtgggttttgattgtgtgtgttgcgtttagagggagtgtacgtggagttacgattgctgggaatggggttccgtttgggagaagcttttgttcgg 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43376353 ggtttgtgggttttgattgtgtgtgttgcgtttagagggagtgtacgtggagttacgattgctgggaatggggttccgtttgggagaagcttttgttcgg 43376452  T
Q  105 ggatttggatttctaccaacgcgttttctagttgtgtggacatgt-------------ttgggaagttgaaagtggttctgatcagagtttgatctgatg 191  Q
    |||||||||||||||||||||||||||||||||||||||||||||             ||||||||||||||||||||||||||||||||||||||||||    
T  43376453 ggatttggatttctaccaacgcgttttctagttgtgtggacatgtttgggaagataaattgggaagttgaaagtggttctgatcagagtttgatctgatg 43376552  T
Q  192 agtgtttcttccacctggatggaaattcagaccaagttcatcagcaataacggataggcaatgctatggcccaccaccacacagacacacgtcacttc 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||| |||||||||    
T  43376553 agtgtttcttccacctggatggaaattcagaccaagttcatcagcaataacggataggcaatgctatggc---ccaccacacagacacccgtcacttc 43376647  T

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