View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15352_low_2 (Length: 771)

Name: NF15352_low_2
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15352_low_2
NF15352_low_2
[»] chr1 (10 HSPs)
chr1 (17-650)||(49313449-49314115)
chr1 (161-282)||(29657361-29657482)
chr1 (161-220)||(35413023-35413082)
chr1 (161-220)||(43537197-43537256)
chr1 (161-292)||(10061589-10061720)
chr1 (161-243)||(21540071-21540153)
chr1 (161-207)||(23906671-23906717)
chr1 (719-757)||(49314184-49314222)
chr1 (164-244)||(11470024-11470104)
chr1 (161-245)||(35149691-35149775)
[»] chr2 (9 HSPs)
chr2 (161-225)||(32976069-32976133)
chr2 (175-243)||(3167907-3167975)
chr2 (161-245)||(20142965-20143049)
chr2 (161-245)||(27407419-27407503)
chr2 (172-245)||(37714431-37714504)
chr2 (161-245)||(38320227-38320311)
chr2 (161-203)||(13716779-13716821)
chr2 (161-222)||(37899553-37899614)
chr2 (164-207)||(4434297-4434340)
[»] chr7 (8 HSPs)
chr7 (164-282)||(22631480-22631598)
chr7 (164-288)||(21882753-21882877)
chr7 (161-231)||(20125587-20125657)
chr7 (161-220)||(24250506-24250565)
chr7 (144-207)||(46413811-46413874)
chr7 (164-220)||(23611801-23611857)
chr7 (161-220)||(23730555-23730614)
chr7 (161-207)||(8123688-8123734)
[»] chr3 (5 HSPs)
chr3 (161-292)||(2671900-2672031)
chr3 (172-220)||(26442957-26443005)
chr3 (161-245)||(34905843-34905927)
chr3 (161-207)||(10593525-10593571)
chr3 (161-207)||(45852999-45853045)
[»] chr4 (8 HSPs)
chr4 (166-308)||(42504158-42504300)
chr4 (161-220)||(25817662-25817721)
chr4 (158-207)||(41545409-41545458)
chr4 (161-290)||(24060573-24060702)
chr4 (165-221)||(16528564-16528620)
chr4 (161-207)||(42108751-42108797)
chr4 (164-209)||(2765431-2765476)
chr4 (164-207)||(5288522-5288565)
[»] scaffold0018 (1 HSPs)
scaffold0018 (167-245)||(69952-70030)
[»] chr8 (4 HSPs)
chr8 (161-245)||(29414379-29414463)
chr8 (143-245)||(26415531-26415633)
chr8 (161-207)||(24068181-24068227)
chr8 (161-207)||(29543677-29543723)
[»] chr5 (5 HSPs)
chr5 (161-245)||(25493816-25493900)
chr5 (161-207)||(24402040-24402086)
chr5 (161-206)||(3040326-3040371)
chr5 (165-207)||(30071772-30071814)
chr5 (161-207)||(40519176-40519222)
[»] chr6 (7 HSPs)
chr6 (161-220)||(32871805-32871864)
chr6 (161-244)||(6784730-6784813)
chr6 (161-222)||(28867182-28867243)
chr6 (167-292)||(2130472-2130597)
chr6 (161-244)||(6519237-6519320)
chr6 (161-207)||(11301833-11301879)
chr6 (161-207)||(34713498-34713544)


Alignment Details
Target: chr1 (Bit Score: 402; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 17 - 650
Target Start/End: Original strand, 49313449 - 49314115
Alignment:
Q  17 acaaaatttatacaaacattcaatcgaatcatgttatcgtgacaactttttgatgtgagtcaggtattcgtcggatataaccatgatttatgtcaaagat 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49313449 acaaaatttatacaaacattcaatcgaatcatgttatcgtgacaactttttgatgtgagtcaggtattcgtcggatataaccatgatttatgtcaaagat 49313548  T
Q  117 ttccttcgaaaaattaatattattatgagcattgctatttatccat-----------caagaattgatcaagaaaaggtctcaaccaattaaatttgtta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||| |||||||  ||||||||||||||    
T  49313549 ttccttcgaaaaattaatattattatgagcattgctatttatccatagagtttttatcaagaattgatcaagaaaatgtctcaattaattaaatttgtta 49313648  T
Q  206 ttggtcggatatcaaagaagataatgaagttta-------------------attaaggnnnnnnnttagcaaatacaccgtcaagaaattttcttaata 286  Q
    || |||||| |||||||||||||||||||||||                   |||||||       ||||||||||||||||||| ||| |||||| |||    
T  49313649 ttagtcggaaatcaaagaagataatgaagtttaattaagataatgaagtttaattaaggaaagaaattagcaaatacaccgtcaaaaaaatttcttgata 49313748  T
Q  287 cattttttcgttgtatttatcaattatctattattatattttcgtaattgtatgtatatgaa-gtcataacctttgtttaatctaaaagtatataaagtc 385  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| ||||||||    
T  49313749 cattttttcgttgtatttatcaattatctattattatattttcgtaattgtatgtatttgaaagtcataacctttgtttaatctaaaagtaaataaagtc 49313848  T
Q  386 ataaccttgggcctcaggctctcttttgtaccnnnnnnnnnnnnnnn--gtcataacctttgttacattgattcttaaaatatctttaaaaacgtgtata 483  Q
    ||||||||| ||||||||| || |||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  49313849 ataaccttgagcctcaggccctattttgtaccaaaaaaaaaaaaaaaaagtcataacctttgttacattgattcttaaaatatctttaaaaacgtgtaca 49313948  T
Q  484 taatgaaaaatgattagaggtggcaatccctttaaagttggatattataatgttcattcttatatctgtgttttaataaatgcttgtactcgagctcgca 583  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |    
T  49313949 taatgaaaagtgattagaggtggcaatccctttaaagttggatattataatgtccattcttatatctgtgttttaataaatgcttgtactcgagctcgta 49314048  T
Q  584 cccttgtggagagccggtccaatgcatttataggtttaaagtgaattttgagtttatacctatctta 650  Q
     |||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  49314049 tccttgtggagagccggtccaatgcatttataggtttaaagtgaattttaagttaatacctatctta 49314115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 282
Target Start/End: Original strand, 29657361 - 29657482
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaaggnnnnnnnttagcaaa 260  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||| | || | ||||||| || ||||||  | |||||||||       ||||||||    
T  29657361 atcaaaaattggtcaagaaaaggtctcaaccaattaaatttgttatttgccgaaaatcaaaggaggtaatgatatgtaattaaggaaaggtgttagcaaa 29657460  T
Q  261 tacaccgtcaagaaattttctt 282  Q
    ||||| |||  |||||||||||    
T  29657461 tacactgtcttgaaattttctt 29657482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 35413023 - 35413082
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaa 220  Q
    ||||| |||| |||||||||||||||||||||||||||||||||||| | |||| |||||    
T  35413023 atcaataatttatcaagaaaaggtctcaaccaattaaatttgttatttgacggaaatcaa 35413082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 43537256 - 43537197
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaa 220  Q
    |||||||||| ||||||||||||||||| |||||||||||||||||| | |||| |||||    
T  43537256 atcaagaattaatcaagaaaaggtctcagccaattaaatttgttatttgccggaaatcaa 43537197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 10061589 - 10061720
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaaggnnnnnnnttagcaaa 260  Q
    |||||||||| ||||| |||| ||||||||||||||||||||||||| | | || ||||| | || |||||| || |||||||||       ||||||||    
T  10061589 atcaagaatttatcaaaaaaaagtctcaaccaattaaatttgttatttgacagaaatcaagggaggtaatgatgtgtaattaaggaaatgtgttagcaaa 10061688  T
Q  261 tacaccgtcaagaaattttcttaatacatttt 292  Q
    || || |||  ||||||||||| ||| |||||    
T  10061689 taaactgtcttgaaattttcttgataaatttt 10061720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 243
Target Start/End: Original strand, 21540071 - 21540153
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaa 243  Q
    |||||||| | |||||||||| |||||| |||||||||||||||||| | |||| || || | |||||||||||| |||||||    
T  21540071 atcaagaaattatcaagaaaatgtctcagccaattaaatttgttatttggcggaaattaagggagataatgaagtgtaattaa 21540153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 23906717 - 23906671
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||||    
T  23906717 atcaagaattgatcaagaaaaagtttcagccaattaaatttgttatt 23906671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 719 - 757
Target Start/End: Original strand, 49314184 - 49314222
Alignment:
Q  719 tgttaatgcatttaagcgagttttaagttaatccctttg 757  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  49314184 tgttaatgcatttaagtgagttttaagttaatccctttg 49314222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 244
Target Start/End: Original strand, 11470024 - 11470104
Alignment:
Q  164 aagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaag 244  Q
    ||||||| ||||||||||  ||| |||||||||||||||||||| | |||| ||||| | || |||||| || ||||||||    
T  11470024 aagaatttatcaagaaaatatcttaaccaattaaatttgttatttggcggaaatcaagggaggtaatgatgtgtaattaag 11470104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 35149775 - 35149691
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    |||||||||| ||||||||||  ||| |||||||||||||||||||| | |  | ||||| | ||||||||| || |||||||||    
T  35149775 atcaagaatttatcaagaaaatatcttaaccaattaaatttgttatttgacataaatcaagggagataatgatgtataattaagg 35149691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 161 - 225
Target Start/End: Complemental strand, 32976133 - 32976069
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaag 225  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  32976133 atcaagaattgatcaagaaaatgtctcaaccaattaaatttgttatttgtcggaaatcaaagaag 32976069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 175 - 243
Target Start/End: Original strand, 3167907 - 3167975
Alignment:
Q  175 aagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaa 243  Q
    ||||||||||||||||||||||||||| ||||| |||||| |||||||||| |||||| || |||||||    
T  3167907 aagaaaaggtctcaaccaattaaatttattatttgtcggaaatcaaagaaggtaatgatgtgtaattaa 3167975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 20142965 - 20143049
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    |||||||||| |||||||||| ||||||||||||||||||| ||||| | |||| ||||| |||| |||||| || |||||||||    
T  20142965 atcaagaatttatcaagaaaaagtctcaaccaattaaatttattatttggcggaaatcaaggaaggtaatgatgtgtaattaagg 20143049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 27407419 - 27407503
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    |||||||||||||||||||||| | ||| ||||||||||||||||||   |||| ||||| ||||||||||  || |||||||||    
T  27407419 atcaagaattgatcaagaaaagatatcagccaattaaatttgttatttaccggaaatcaaggaagataatgctgtgtaattaagg 27407503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 172 - 245
Target Start/End: Original strand, 37714431 - 37714504
Alignment:
Q  172 atcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    ||||||||||||| |||||||||||||||||||||| |  ||| ||||||| ||||||||  || |||||||||    
T  37714431 atcaagaaaaggtatcaaccaattaaatttgttatttgatggaaatcaaaggagataatggtgtgtaattaagg 37714504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Complemental strand, 38320311 - 38320227
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    |||||||||| ||||||||||| | |||||||||||||||||||||| |  ||| ||||||| || |||||| || ||| |||||    
T  38320311 atcaagaatttatcaagaaaagttttcaaccaattaaatttgttatttggtggaaatcaaaggaggtaatgatgtgtaaataagg 38320227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 203
Target Start/End: Complemental strand, 13716821 - 13716779
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgt 203  Q
    |||||||||| |||||||||| |||||||||||||||||||||    
T  13716821 atcaagaatttatcaagaaaaagtctcaaccaattaaatttgt 13716779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 37899614 - 37899553
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaag 222  Q
    ||||| |||| ||||||||||||| |||||||||||||||||| ||| |||| | |||||||    
T  37899614 atcaaaaatttatcaagaaaaggtttcaaccaattaaatttgtgatttgtcgaaaatcaaag 37899553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 4434297 - 4434340
Alignment:
Q  164 aagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||||||||||||||| ||  |||||||||||||||||    
T  4434297 aagaattgatcaagaaaaggtcccagtcaattaaatttgttatt 4434340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 164 - 282
Target Start/End: Original strand, 22631480 - 22631598
Alignment:
Q  164 aagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaaggnnnnnnnttagcaaatac 263  Q
    ||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||| |||||||   || |||||||||       ||||| |||||    
T  22631480 aagaattgatcaagaaaagatctcagccaattaaatttgttatttgtcggaaatcaaaggagataatagtgtgtaattaaggaaaggtgttagctaatac 22631579  T
Q  264 accgtcaagaaattttctt 282  Q
    ||||||  |||||||||||    
T  22631580 accgtcttgaaattttctt 22631598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 164 - 288
Target Start/End: Complemental strand, 21882877 - 21882753
Alignment:
Q  164 aagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaaggnnnnnnnttagcaaatac 263  Q
    |||||||||| |||||||| ||||| |||||||||||||||||| | |||| ||||| | || |||||  || |||||||||       |||||||||||    
T  21882877 aagaattgattaagaaaagatctcagccaattaaatttgttatttgccggaaatcaagggaggtaatggtgtgtaattaaggaaaagtgttagcaaatac 21882778  T
Q  264 accgtcaagaaattttcttaataca 288  Q
    || |||  ||||||||||| |||||    
T  21882777 actgtcttgaaattttctttataca 21882753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 231
Target Start/End: Original strand, 20125587 - 20125657
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatg 231  Q
    ||||||||||||||||||||| || ||| |||||||||||||||| | ||| || || |||||||||||||    
T  20125587 atcaagaattgatcaagaaaatgtgtcagccaattaaatttgttacttgtcagaaattaaagaagataatg 20125657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 24250565 - 24250506
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaa 220  Q
    |||||||||||||||||||||| ||| | |||||| ||||||||||| |||||| |||||    
T  24250565 atcaagaattgatcaagaaaagatcttatccaatttaatttgttatttgtcggaaatcaa 24250506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 144 - 207
Target Start/End: Complemental strand, 46413874 - 46413811
Alignment:
Q  144 agcattgctatttatccatcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||||||||| ||  ||  || |||||||||| |||||||||||||||||||||||||    
T  46413874 agcattgctatttatctatagagtttttatcaagaaaatgtctcaaccaattaaatttgttatt 46413811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 164 - 220
Target Start/End: Complemental strand, 23611857 - 23611801
Alignment:
Q  164 aagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaa 220  Q
    ||||||| |||||||||| |||||||| |||||||||||||||| | |||| |||||    
T  23611857 aagaatttatcaagaaaatgtctcaacaaattaaatttgttatttgacggaaatcaa 23611801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 23730614 - 23730555
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaa 220  Q
    ||||||||||||||||||||| || ||| | ||||||||| |||||| |||||| |||||    
T  23730614 atcaagaattgatcaagaaaacgtttcagcaaattaaattcgttatttgtcggaaatcaa 23730555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 8123688 - 8123734
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||| |||||||||||||||| ||||||  |||||||||||||||||    
T  8123688 atcatgaattgatcaagaaaatgtctcagtcaattaaatttgttatt 8123734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 161 - 292
Target Start/End: Original strand, 2671900 - 2672031
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaaggnnnnnnnttagcaaa 260  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||  | | |||| || ||||||||| || |||||||||       ||| ||||    
T  2671900 atcaagaattgatcaagaaaaggtgtcagccaattaaatttgttattggctgaaaatcagaggagataatgatgtgtaattaaggaaagatgttaacaaa 2671999  T
Q  261 tacaccgtcaagaaattttcttaatacatttt 292  Q
    ||||| |||   |||||||||| |||||||||    
T  2672000 tacactgtcttaaaattttcttgatacatttt 2672031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 26442957 - 26443005
Alignment:
Q  172 atcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaa 220  Q
    |||||||||||||||||||||||||||||||||||| | |||| |||||    
T  26442957 atcaagaaaaggtctcaaccaattaaatttgttatttggcggaaatcaa 26443005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 34905843 - 34905927
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    ||||||||||||| ||||||| |||||| ||| |||||||||||||| |||  | ||||||| || |||||| || |||||||||    
T  34905843 atcaagaattgattaagaaaatgtctcagccagttaaatttgttatttgtcaaaaatcaaaggaggtaatgatgtataattaagg 34905927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 10593571 - 10593525
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||| ||| |||||| |||||||||||||||||||||||||    
T  10593571 atcaagaatttatccagaaaatgtctcaaccaattaaatttgttatt 10593525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 45853045 - 45852999
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||| |||||||||| ||||||||||||||||||| |||||    
T  45853045 atcaagaattaatcaagaaaaagtctcaaccaattaaatttattatt 45852999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 8e-17; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 166 - 308
Target Start/End: Complemental strand, 42504300 - 42504158
Alignment:
Q  166 gaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaaggnnnnnnnttagcaaatacac 265  Q
    ||||||||||||||||| | |||||||||||||||||||||| | |||| ||||| | || |||||| || |||||||||       ||| |||||||||    
T  42504300 gaattgatcaagaaaagatttcaaccaattaaatttgttatttgccggaaatcaagggaggtaatgatgtgtaattaaggaaaggtgttaacaaatacac 42504201  T
Q  266 cgtcaagaaattttcttaatacattttttcgttgtatttatca 308  Q
     |||   |||||||||| ||||||||| || |||||| |||||    
T  42504200 tgtcttaaaattttcttgatacattttgtcattgtatctatca 42504158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 161 - 220
Target Start/End: Original strand, 25817662 - 25817721
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaa 220  Q
    |||||||||||||||||||||||||||| |||||||||||||||||| | |||| |||||    
T  25817662 atcaagaattgatcaagaaaaggtctcagccaattaaatttgttatttgacggaaatcaa 25817721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 41545409 - 41545458
Alignment:
Q  158 tccatcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    ||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  41545409 tccatcaagaatttatcaagaaaaggcctcaaccaattaaatttgttatt 41545458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 290
Target Start/End: Original strand, 24060573 - 24060702
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaaggnnnnnnnttagcaaa 260  Q
    ||||||||||||||||||||| |||| | | |||||||||||||||||||  || ||||| | ||||||||  || |||||||||       ||||||||    
T  24060573 atcaagaattgatcaagaaaatgtctaagctaattaaatttgttattggttagaaatcaagggagataatggtgtgtaattaaggaaatgtgttagcaaa 24060672  T
Q  261 tacaccgtcaagaaattttcttaatacatt 290  Q
    ||||| ||    ||||||||||||||||||    
T  24060673 tacactgttttaaaattttcttaatacatt 24060702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 221
Target Start/End: Original strand, 16528564 - 16528620
Alignment:
Q  165 agaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaa 221  Q
    |||||||||||| | ||||||||| |||||||||||||||||| |||||| ||||||    
T  16528564 agaattgatcaatagaaggtctcagccaattaaatttgttatttgtcggaaatcaaa 16528620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 42108797 - 42108751
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    ||||||||||||||||||||| || ||| ||||||||||||||||||    
T  42108797 atcaagaattgatcaagaaaaagtttcagccaattaaatttgttatt 42108751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 2765476 - 2765431
Alignment:
Q  164 aagaattgatcaagaaaaggtctcaaccaattaaatttgttattgg 209  Q
    |||| |||||||||||||||||| | ||||||||||||||||||||    
T  2765476 aagagttgatcaagaaaaggtctaagccaattaaatttgttattgg 2765431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 207
Target Start/End: Original strand, 5288522 - 5288565
Alignment:
Q  164 aagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||| ||||||| |||||| ||||||||||||||||||    
T  5288522 aagaattgattaagaaaatgtctcagccaattaaatttgttatt 5288565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 167 - 245
Target Start/End: Complemental strand, 70030 - 69952
Alignment:
Q  167 aattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    |||||||||||||||||| ||| |||||||||||||||||||| |||| ||||| | ||||||||  || |||||||||    
T  70030 aattgatcaagaaaaggtttcagccaattaaatttgttattggccggaaatcaagggagataatggggtgtaattaagg 69952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 29414379 - 29414463
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    ||||| ||||||||||||||| |||||| |||||||||||||||||| | || | ||||| |||| |||||  ||||||||||||    
T  29414379 atcaaaaattgatcaagaaaatgtctcagccaattaaatttgttatttgccgaaaatcaaggaaggtaatggtgtttaattaagg 29414463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 245
Target Start/End: Original strand, 26415531 - 26415633
Alignment:
Q  143 gagcattgctatttatccatcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaatta 242  Q
    ||||||||||||||||| |   ||  || |||||||||||||||||||||||||||||| ||||| | |||| || |||  ||||||||| || ||||||    
T  26415531 gagcattgctatttatctagagagtttttatcaagaaaaggtctcaaccaattaaatttattatttgacggaaattaaaagagataatgatgtgtaatta 26415630  T
Q  243 agg 245  Q
    |||    
T  26415631 agg 26415633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 24068227 - 24068181
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||||||| |||||| |||||| ||||||||||||||||||    
T  24068227 atcaagaattgatcgagaaaaagtctcagccaattaaatttgttatt 24068181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 207
Target Start/End: Complemental strand, 29543723 - 29543677
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    ||||| |||| ||||||||||  ||||||||||||||||||||||||    
T  29543723 atcaaaaatttatcaagaaaatatctcaaccaattaaatttgttatt 29543677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 161 - 245
Target Start/End: Original strand, 25493816 - 25493900
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaagg 245  Q
    ||||||||||||||||||||| |||||| ||||||||||||||| || ||| || ||||||| || |||||  || |||||||||    
T  25493816 atcaagaattgatcaagaaaatgtctcagccaattaaatttgttctttgtcagaaatcaaaggaggtaatggtgtgtaattaagg 25493900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 24402040 - 24402086
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||| ||||||||||| |||||||||| |||||||||||||    
T  24402040 atcaagaatttatcaagaaaagatctcaaccaaataaatttgttatt 24402086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 3040371 - 3040326
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttat 206  Q
    |||||||||| |||||||||| ||||||| ||||||||||||||||    
T  3040371 atcaagaatttatcaagaaaatgtctcaatcaattaaatttgttat 3040326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 207
Target Start/End: Original strand, 30071772 - 30071814
Alignment:
Q  165 agaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||| | |||||||||||||||||||||||||||| |||||    
T  30071772 agaatttaacaagaaaaggtctcaaccaattaaatttattatt 30071814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 40519176 - 40519222
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||| || ||||| | |||||||||||||||||||||||||    
T  40519176 atcaagaatttattaagaataagtctcaaccaattaaatttgttatt 40519222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 161 - 220
Target Start/End: Complemental strand, 32871864 - 32871805
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaa 220  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| | |||| |||||    
T  32871864 atcaagaatttatcaagaaaaggtttcaaccaattaaatttgttatttgacggaaatcaa 32871805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 6784813 - 6784730
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaag 244  Q
    ||||| |||| ||||| ||||| ||||| |||||||||||||||||| |||||| ||||| | ||||||||  || ||||||||    
T  6784813 atcaacaatttatcaataaaagatctcagccaattaaatttgttatttgtcggaaatcaagggagataatggtgtgtaattaag 6784730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 222
Target Start/End: Original strand, 28867182 - 28867243
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaag 222  Q
    ||||||||||||| ||||||| || |||| ||||||||||||||||| || ||| |||||||    
T  28867182 atcaagaattgattaagaaaaagtttcaatcaattaaatttgttatttgttggaaatcaaag 28867243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 167 - 292
Target Start/End: Complemental strand, 2130597 - 2130472
Alignment:
Q  167 aattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaaggnnnnnnnttagcaaatacacc 266  Q
    |||| ||||||||||  |||||||||||||||||||||||| | |||| ||||||| || | ||   || |||||||||       ||||||||||||||    
T  2130597 aatttatcaagaaaaaatctcaaccaattaaatttgttatttggcggaaatcaaaggaggtgattgtgtgtaattaaggaaaggtgttagcaaatacacc 2130498  T
Q  267 gtcaagaaattttcttaatacatttt 292  Q
    ||   ||||||||||| ||| |||||    
T  2130497 gttttgaaattttcttgataaatttt 2130472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 244
Target Start/End: Original strand, 6519237 - 6519320
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttattggtcggatatcaaagaagataatgaagtttaattaag 244  Q
    ||||| ||||||||||||||| ||||||  ||||||||||||||||| | || | ||||||| |  |||||| || ||||||||    
T  6519237 atcaaaaattgatcaagaaaatgtctcagtcaattaaatttgttatttgccgaaaatcaaaggatgtaatgatgtgtaattaag 6519320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 11301833 - 11301879
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    ||||||||||||||| ||||||||||||  ||||| |||||||||||    
T  11301833 atcaagaattgatcatgaaaaggtctcagtcaattgaatttgttatt 11301879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 34713498 - 34713544
Alignment:
Q  161 atcaagaattgatcaagaaaaggtctcaaccaattaaatttgttatt 207  Q
    |||||||||| |||||||||  |||||||| ||||||||||||||||    
T  34713498 atcaagaatttatcaagaaattgtctcaactaattaaatttgttatt 34713544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University