View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15352_low_20 (Length: 274)
Name: NF15352_low_20
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 109; Significance: 7e-55; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 36 - 160
Target Start/End: Original strand, 1842456 - 1842580
Alignment:
| Q |
36 |
aatgcaggagtaggagcaacacttattcttcttttggttgggacattctcgtacttaatatatcataagaggaaattcatcaaaatgaaagagaaattct |
135 |
Q |
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| T |
1842456 |
aatgcaggagtaggagcaacgcttattcttcttttggttgggacattctcgtacttaatataccataaaaggaaattcatcaaaatgaaagagaaattct |
1842555 |
T |
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| Q |
136 |
ttgagcagaatggtggtttgatttt |
160 |
Q |
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| T |
1842556 |
ttgagcagaatggtggtctgatttt |
1842580 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 1868029 - 1868165
Alignment:
| Q |
24 |
tgatatattctgaatgcaggagtaggagcaacacttattcttcttttggttgggacattctcgtacttaatatatcataagaggaaattcatcaaaatga |
123 |
Q |
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| T |
1868029 |
tgatatattttgcgtgcaggagtaggaataacatttattcttctctttttgggaacattctcgtacttaatgtaccataagaggaaattcatcaaaatga |
1868128 |
T |
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| Q |
124 |
aagagaaattctttgagcagaatggtggtttgatttt |
160 |
Q |
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| T |
1868129 |
aagagaaattcttcgaacagaatggtggtttgatttt |
1868165 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 227 - 258
Target Start/End: Original strand, 1868232 - 1868263
Alignment:
| Q |
227 |
tgctaaaatattcacacaagatcagctaaaca |
258 |
Q |
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| T |
1868232 |
tgctaaaatattcacacaagatcagctaaaca |
1868263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 229 - 258
Target Start/End: Original strand, 1842625 - 1842654
Alignment:
| Q |
229 |
ctaaaatattcacacaagatcagctaaaca |
258 |
Q |
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| T |
1842625 |
ctaaaatattcacacaagatcagctaaaca |
1842654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 37 - 153
Target Start/End: Original strand, 37567453 - 37567569
Alignment:
| Q |
37 |
atgcaggagtaggagcaacacttattcttcttttggttgggacattctcgtacttaatatatcataagaggaaattcatcaaaatgaaagagaaattctt |
136 |
Q |
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||||||||||||||||| | ||||| |||| || || ||| | | || ||||||||||| || || |||||| | ||||| |||||||||||||||| |
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| T |
37567453 |
atgcaggagtaggagcagtatttattgttctatttgtgtggataatatcctacttaatataccaaaaaaggaaacttgtcaaattgaaagagaaattctt |
37567552 |
T |
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| Q |
137 |
tgagcagaatggtggtt |
153 |
Q |
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| T |
37567553 |
taggcagaatggaggtt |
37567569 |
T |
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