View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15352_low_23 (Length: 266)

Name: NF15352_low_23
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15352_low_23
NF15352_low_23
[»] chr6 (1 HSPs)
chr6 (118-250)||(15842137-15842268)
[»] chr5 (3 HSPs)
chr5 (12-123)||(17821037-17821147)
chr5 (125-240)||(29300328-29300441)
chr5 (119-239)||(1159421-1159540)
[»] scaffold0272 (1 HSPs)
scaffold0272 (118-247)||(1118-1246)
[»] chr1 (3 HSPs)
chr1 (118-247)||(10238115-10238242)
chr1 (140-239)||(21970997-21971096)
chr1 (150-242)||(24615479-24615571)
[»] chr3 (3 HSPs)
chr3 (142-247)||(21943476-21943581)
chr3 (153-239)||(26476204-26476290)
chr3 (203-248)||(9367455-9367500)
[»] chr8 (2 HSPs)
chr8 (141-247)||(29576306-29576412)
chr8 (151-240)||(31400981-31401070)
[»] chr4 (4 HSPs)
chr4 (118-247)||(29081665-29081793)
chr4 (150-215)||(55352083-55352148)
chr4 (147-248)||(13853002-13853103)
chr4 (207-247)||(9159247-9159287)
[»] chr7 (1 HSPs)
chr7 (141-247)||(6230721-6230827)
[»] chr2 (1 HSPs)
chr2 (153-196)||(33483847-33483890)


Alignment Details
Target: chr6 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 118 - 250
Target Start/End: Original strand, 15842137 - 15842268
Alignment:
Q  118 agctttgttgagggggtttgagaatggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagat 217  Q
    ||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15842137 agctttgttgagggggtttgaga-tggcatccggattgaaggttaattttctaaaaagttgcttgattggggtgaatgtagcgagggagtttatggagat 15842235  T
Q  218 ggcttatgattttttgaattgtagtgaagggtg 250  Q
    ||||| ||||||| |||||||||||||||||||    
T  15842236 ggcttgtgattttctgaattgtagtgaagggtg 15842268  T

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Target: chr5 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 12 - 123
Target Start/End: Complemental strand, 17821147 - 17821037
Alignment:
Q  12 atgaagacaagcgcaaataacttaaaagccagatgaaatcatacattagttaatttttcacaggtatataaacaaaccataacataaagcactttcaaca 111  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17821147 atgaagacaagcgcaaataacttaaaa-caagatgaaatcatacattagttaatttttcacaggtatataaacaaaccataacataaagcactatcaaca 17821049  T
Q  112 ttcatgagcttt 123  Q
    ||||||||||||    
T  17821048 ttcatgagcttt 17821037  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 240
Target Start/End: Original strand, 29300328 - 29300441
Alignment:
Q  125 ttgagggggtttgagaatggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttat 224  Q
    |||||||||||||||| |||| |||||| | ||||| ||||||  ||||||||||||||||||  | ||||||| ||| || |||||||| ||||| |      
T  29300328 ttgagggggtttgaga-tggcttccgggcttaaggtgaatttttccaaaagttgcttgattggtattaatgtagagagaga-tttatggacatggcgtgc 29300425  T
Q  225 gattttttgaattgta 240  Q
     |||||||||||||||    
T  29300426 aattttttgaattgta 29300441  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 239
Target Start/End: Original strand, 1159421 - 1159540
Alignment:
Q  119 gctttgttgagggggtttgagaatggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatg 218  Q
    |||||||||||||| ||||| | |||| |||||||||||| |||||||  | |||||| | ||||| ||| | ||||| |||  || ||||||||| |||    
T  1159421 gctttgttgaggggttttga-attggcctccgggttgaagattaatttctttaaaagtagtttgatggggattaatgtggcgccggtgtttatggatatg 1159519  T
Q  219 gcttatgattttttgaattgt 239  Q
    || | | ||||||||||||||    
T  1159520 gcgtgtaattttttgaattgt 1159540  T

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Target: scaffold0272 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 1118 - 1246
Alignment:
Q  118 agctttgttgagggggtttgagaatggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagat 217  Q
    ||||||||||||  |||| |||| || ||||||  |||||||| ||||| || |||||||| |||||||| |||||||| | |||||| |||||||||||    
T  1118 agctttgttgagaaggttcgaga-tgacatccgaattgaaggtgaatttccttaaaagttgtttgattggagtgaatgtggagagggattttatggagat 1216  T
Q  218 ggcttatgattttttgaattgtagtgaagg 247  Q
    ||||| || |||||||||||||||||||||    
T  1217 ggcttgtggttttttgaattgtagtgaagg 1246  T

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Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 10238115 - 10238242
Alignment:
Q  118 agctttgttgagggggtttgagaatggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagat 217  Q
    |||||||||||| || ||||||| |||||||||| ||||||||||||||||  |||||||| ||||| ||||||||||| |  || || ||||| |||||    
T  10238115 agctttgttgagaggttttgaga-tggcatccggattgaaggttaattttcataaaagttgtttgat-ggggtgaatgtggaaagagattttatcgagat 10238212  T
Q  218 ggcttatgattttttgaattgtagtgaagg 247  Q
    |||||  |||||||||||||||||||||||    
T  10238213 ggcttgcgattttttgaattgtagtgaagg 10238242  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 239
Target Start/End: Original strand, 21970997 - 21971096
Alignment:
Q  140 aatggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgt 239  Q
    |||||| |||| |||||||||||||||| |||||||||| ||||| ||| | ||||| ||   |||||||||||| ||||||| | ||||||||||||||    
T  21970997 aatggcttccgagttgaaggttaattttttcaaaagttgtttgatggggattaatgtggcaccggagtttatggatatggcttgtaattttttgaattgt 21971096  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 24615571 - 24615479
Alignment:
Q  150 gggttgaaggttaattttctcaaaagttgcttgattggggtgaatgt-agcgagggagtttatggagatggcttatgattttttgaattgtagt 242  Q
    ||||||||| |||||||| | || ||||  ||||| ||||||||||| || |||| | |||||||||||||| | | |||||||||||||||||    
T  24615571 gggttgaagattaattttattaagagttcgttgataggggtgaatgtgagggagg-actttatggagatggcatgtaattttttgaattgtagt 24615479  T

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Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 142 - 247
Target Start/End: Complemental strand, 21943581 - 21943476
Alignment:
Q  142 tggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtag 241  Q
    ||||||||||||||||||| || || || ||||||||||||||  |||||||||| | ||||||||||||||| ||||  | |||||| |||||||||||    
T  21943581 tggcatccgggttgaaggtaaacttccttaaaagttgcttgatatgggtgaatgtggagagggagtttatggaaatggtgtgtgatttcttgaattgtag 21943482  T
Q  242 tgaagg 247  Q
    ||||||    
T  21943481 tgaagg 21943476  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 239
Target Start/End: Complemental strand, 26476290 - 26476204
Alignment:
Q  153 ttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgt 239  Q
    ||||||||||||||| |||||||||| ||||| || |||||||| |  ||  | |||||||| |  |||| ||||||||||||||||    
T  26476290 ttgaaggttaattttttcaaaagttgtttgataggtgtgaatgtgggtagaaattttatggatagagcttgtgattttttgaattgt 26476204  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 9367500 - 9367455
Alignment:
Q  203 ggagtttatggagatggcttatgattttttgaattgtagtgaaggg 248  Q
    ||||||||||   ||||||| |||||||||||||||||||||||||    
T  9367500 ggagtttatgaccatggcttgtgattttttgaattgtagtgaaggg 9367455  T

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Target: chr8 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 247
Target Start/End: Complemental strand, 29576412 - 29576306
Alignment:
Q  141 atggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgta 240  Q
    ||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||| || | | |||| ||||| | ||||| | | ||||| ||||||     
T  29576412 atggcatccaggttgaaggttaattttctgaaaagttgcttgattggggtcaatgtggctaagaagttcatggatacggcttgtaagttttttaattgtt 29576313  T
Q  241 gtgaagg 247  Q
    |||||||    
T  29576312 gtgaagg 29576306  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 240
Target Start/End: Original strand, 31400981 - 31401070
Alignment:
Q  151 ggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgta 240  Q
    ||||||| ||||||||  | ||||||||||||||  |||| ||||| |||| ||| |||||||||||||| | ||| || ||||||||||    
T  31400981 ggttgaaagttaatttctttaaaagttgcttgataagggtaaatgtggcgatggattttatggagatggcgtgtgagttcttgaattgta 31401070  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 118 - 247
Target Start/End: Original strand, 29081665 - 29081793
Alignment:
Q  118 agctttgttgagggggtttgagaatggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagat 217  Q
    ||||||||||||||| ||||| |||||| || || |||||||| ||||| || || ||||||||||| ||| | ||||| |  || || |||||||| ||    
T  29081665 agctttgttgaggggttttga-aatggcgtctggattgaaggtgaatttccttaagagttgcttgatggggataaatgtggatagagactttatggatat 29081763  T
Q  218 ggcttatgattttttgaattgtagtgaagg 247  Q
    ||||||||| ||||||||||||||| ||||    
T  29081764 ggcttatgagtttttgaattgtagtcaagg 29081793  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 150 - 215
Target Start/End: Original strand, 55352083 - 55352148
Alignment:
Q  150 gggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggag 215  Q
    |||||||||||||| |||  ||| |||||||||||||| ||||||||||  |||||||||||||||    
T  55352083 gggttgaaggttaactttgccaagagttgcttgattggagtgaatgtagaaagggagtttatggag 55352148  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 13853002 - 13853103
Alignment:
Q  147 tccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgtagtgaag 246  Q
    ||||| |||||| |||||||| | || ||||  ||||||||||| |||||  ||  ||| ||||||| |||||||| ||| ||||||||||||||| |||    
T  13853002 tccggtttgaagattaatttttttaagagttctttgattggggtaaatgtgccggaggaatttatggggatggcttgtgactttttgaattgtagtcaag 13853101  T
Q  247 gg 248  Q
    ||    
T  13853102 gg 13853103  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 207 - 247
Target Start/End: Complemental strand, 9159287 - 9159247
Alignment:
Q  207 tttatggagatggcttatgattttttgaattgtagtgaagg 247  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  9159287 tttatggagatggcttgtaattttttgaattgtagtgaagg 9159247  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 247
Target Start/End: Original strand, 6230721 - 6230827
Alignment:
Q  141 atggcatccgggttgaaggttaattttctcaaaagttgcttgattggggtgaatgtagcgagggagtttatggagatggcttatgattttttgaattgta 240  Q
    |||| ||| |||||||| |||||||||   || ||||||||||||||||||||||| |  ||||||||||||||   ||| |   |||||||||||||||    
T  6230721 atggtatcggggttgaaagttaattttgcgaagagttgcttgattggggtgaatgttggtagggagtttatggatgcggcgtgcaattttttgaattgta 6230820  T
Q  241 gtgaagg 247  Q
    | |||||    
T  6230821 gggaagg 6230827  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 153 - 196
Target Start/End: Original strand, 33483847 - 33483890
Alignment:
Q  153 ttgaaggttaattttctcaaaagttgcttgattggggtgaatgt 196  Q
    ||||||||||||||| | |||||||||||||| |||||||||||    
T  33483847 ttgaaggttaattttgtgaaaagttgcttgatcggggtgaatgt 33483890  T

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