View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15352_low_24 (Length: 254)
Name: NF15352_low_24
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 37160865 - 37161094
Alignment:
| Q |
1 |
catgcttttttatataggaagtgaagggccctttgtgggtcatatgtatttatgtgatataacaatattggtcacatattatttctgctcgaccaatcat |
100 |
Q |
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| T |
37160865 |
catgcttttttatataggaagtgaagggccctttgtgggtcatatgtatttatgtgatataacaatattggtcacat--tcattctgttcgaccaatcat |
37160962 |
T |
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| Q |
101 |
gacaataatccttccttaccctaaccattttgccaagcaccaatctagttgatcccttaatctttactcgatttgttatccttgtgtagcgtgaccgcac |
200 |
Q |
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| T |
37160963 |
gacaataatccttccttaccctaaccattttgccaagcaccaatctagttgatcccttaatctttactcgatttgttatccttgtgtagcgtgaccgcac |
37161062 |
T |
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| Q |
201 |
tcttatagaacgacattcttggtatagaacac |
232 |
Q |
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| T |
37161063 |
tcttatagaacgacattcttggtatagaacac |
37161094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 230
Target Start/End: Original strand, 37161115 - 37161220
Alignment:
| Q |
132 |
gccaagcaccaatctagttgatcccttaatc-------tttactcgatttgttatccttgtgtagcgtgaccgcactcttatagaacgacattcttggta |
224 |
Q |
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||||||||| ||||||||||||| ||||||| |||||||| |||||||| |||||||||||||| | || |||| |||| | ||||||||| || |
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| T |
37161115 |
gccaagcacaaatctagttgatcacttaatcattagtatttactcgctttgttattcttgtgtagcgtgagcccaatcttgtagatcaacattcttgata |
37161214 |
T |
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| Q |
225 |
tagaac |
230 |
Q |
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|||||| |
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| T |
37161215 |
tagaac |
37161220 |
T |
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