View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15352_low_25 (Length: 239)
Name: NF15352_low_25
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 18 - 226
Target Start/End: Complemental strand, 7223048 - 7222845
Alignment:
| Q |
18 |
caagttaaatcggttcttaagacaaatcaatttgaatcaagaacccctaaatatatcaattttaagtctttaaaatcaatttttgactctccctccctcc |
117 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7223048 |
caagttaaattggttcttaagataaatcaatttgaatcaacaacccctaaatatatcaattttaagtctttaaaatcaatttt-gactctccctcc---- |
7222954 |
T |
|
| Q |
118 |
aaacatgcactatgtcttttaaatcaatttctaagctaatctacttgcaagaaggttcacttctaaccttagcttcatcttatcgttgtgaactccatta |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
7222953 |
aaacatgcactatgtcttttaaatcaatttctaagctaatctagtcgcaagaaggttcccttctaaccttaatttcatcttatggttgtgaactccatta |
7222854 |
T |
|
| Q |
218 |
agaataatc |
226 |
Q |
| |
|
||||||||| |
|
|
| T |
7222853 |
agaataatc |
7222845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University