View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15352_low_26 (Length: 238)
Name: NF15352_low_26
Description: NF15352
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15352_low_26 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 238
Target Start/End: Complemental strand, 34215505 - 34215273
Alignment:
| Q |
18 |
acctgctcaaggggtgcttcatctccaagtgcccaatgactgtcctatattggaatgctcacggtaatggaaactctgacacaagagttgctttnnnnnn |
117 |
Q |
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| T |
34215505 |
acctgctcaaggggtgcttcatctccaagtgcccaatgactgtcctatattggaatgctcacggtaatggaaactctgacacaagagttgctttaaaaaa |
34215406 |
T |
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| Q |
118 |
nttatttctgtctcataaaccattgttaattattattgcggaacctatgat------------aagaggttctgaatgtatattgatgattgataaaaag |
205 |
Q |
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| T |
34215405 |
attatttctgtctcataaaccattgttaattattattgcggaacctatgattttgcggcgtcgaagaggttctgaatgtatattgatgattgataaaaag |
34215306 |
T |
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| Q |
206 |
attaataggaactgttgccaccaatgcctaaaa |
238 |
Q |
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| T |
34215305 |
attaataggaactgttgccaccaatgcctaaaa |
34215273 |
T |
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Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 24 - 168
Target Start/End: Original strand, 11213238 - 11213382
Alignment:
| Q |
24 |
tcaaggggtgcttcatctccaagtgcccaatgactgtcctatattggaatgctcacggtaatggaaactctgacacaagagttgctttnnnnnnnttatt |
123 |
Q |
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| T |
11213238 |
tcaaggggtgattcatctccaagtgcccaatgattgtcctatattggaatactcaaggtattggcaactcagacacaaaagtttctttaaaaaatttatt |
11213337 |
T |
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| Q |
124 |
tctgtctcataaaccattgttaattattattgcggaacctatgat |
168 |
Q |
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| T |
11213338 |
tctgtctcataaatcattgttgattattattgcggaacctttgat |
11213382 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 35222691 - 35222780
Alignment:
| Q |
22 |
gctcaaggggtgcttcatctccaagtgcccaatgactgtcctatattggaatgctcacggtaatggaaactctgacacaagagttgcttt |
111 |
Q |
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| T |
35222691 |
gctcaaggggtgactcatctccaaatgctcaatgattgtcctatattggaatgctcgaggtattagcaactcggacacaagagttgcttt |
35222780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 151
Target Start/End: Original strand, 19552854 - 19552983
Alignment:
| Q |
22 |
gctcaaggggtgcttcatctccaagtgcccaatgactgtcctatattggaatgctcacggtaatggaaactctgacacaagagttgctttnnnnnnntta |
121 |
Q |
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| T |
19552854 |
gctcaaggggtgacccctctccatatgcccaatgaatgtcctttactggaatgttcgaggtattggcaactctgatataagacttgcgttaaaaatttta |
19552953 |
T |
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| Q |
122 |
tttctgtctcataaaccattgttaattatt |
151 |
Q |
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| T |
19552954 |
tttatgtctcataaaccaatgttaattatt |
19552983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 3569179 - 3569232
Alignment:
| Q |
31 |
gtgcttcatctccaagtgcccaatgactgtcctatattggaatgctcacggtaa |
84 |
Q |
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| T |
3569179 |
gtgcttcatctccaagtgcccaatgattgtcctatattggagtgcacaaggtaa |
3569232 |
T |
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